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Workshop schedule August 2016

 

 

CMSP Proteomics Workshop Itinerary

 

August 9 – 11, 2016

 

AUGUST, 9 2016 Tuesday      

(Gortner Lab Room No. 239)

9:00 – 9:15      Welcome  Pratik Jagtap (Gort 239)

9:15 - 10:00    Introduction to Proteomics I. Tim Griffin (Gort 239)

10:00– 10:45   Introduction to Proteomics II. Susan Van Riper (Gort 239)

10:45– 11:00   Break

11:00– 12:30   Sample Preparation Basics Todd Markowski (Gort 239)

 

12:30 – 1:30         Lunch Break

 

(Gortner Lab Rom No. 43)

1:30 – 4:00         Workshops Ia, Ib and Ic (Gort 43) (split into groups)*

 

Workshop Ia*     Stage-tip and representative MALDI analysis.  Todd Markowski            

Workshop Ib*     Protein estimation methods.                            Stephen Harvey

 Workshop Ic*    Sample Preparation Technologies and Instrumentation. Bruce Withuhn

           

AUGUST 10, 2016 Wednesday

(Gortner Lab Room No. 239)

9:00 – 9:45          Introduction to Mass Spectrometry: Mass Spec 101.Tom Krick (Gort 239)

9:50 – 11:15       Tandem MS and Intro to Liquid Chromatography-MS. LeeAnn Higgins (Gort 239)

11:15 – 11:30     Break

11:30 – 12:30     Specialized Applications in mass spectrometry.Bruce Withuhn (Gort 239)

 

12:30 – 1:30     Lunch Break

 

(Gortner Lab Rom No. 43)

1:30 – 4:00      Workshops IIa, IIb, IIc (Gort 43) (split into groups)*

                             (Take Breaks as necessary in between workstations)

Workshop IIa      ESI-Ion Trap MS: Peptide MS/MS and intact protein (Gort 43) Tom Krick

Workshop IIb      ESI-Orbitrap MS: Ultra high accuracy MS and MS/MS (Gort 43) LeeAnn Higgins

Workshop IIc      Manual interpretation of MS/MS spectrum.  (Gort 43) Candace Guerrero

 

AUGUST 11, 2016 Thursday

(Gortner Lab Room No. 239)

9:00 – 9:50      ProteoInformatics Overview. Pratik Jagtap (Gort 239)

9:50 - 10:00    Break

10:00 – 11:15   Protein Identification.  LeeAnn Higgins (Gort 239)

11:15 – 12:15   Protein Validation and Quantification.  Susan Van Riper (Gort 239)

12:15 – 12:30   Publishing Your Data.  Pratik Jagtap (Gort 239)

 

12:30 – 1:30    Lunch Break

 

 1:30 – 4:30     ProteoInformatics Workshop  (Cargill Building SCI 138 (computer lab))

1:30 to 2:30       1) MALDI-TOF Results: Peptide Mass Fingerprinting.    LeeAnn Higgins

2:30 to 3:30       2) Using Galaxy-P for MS/MS Search and related workflows.    Pratik Jagtap

3:30 to 4:30       3) Scaffold Review.                                                                 Susan van Riper