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Dr. Matsuo's Full Publications

This is a complete list of all of Dr. Matsuo's publications. To read more recent publications please see the research pages.

Serikawa, Y., Shirakawa, M., Matsuo, H. & Kyogoku, Y. (1990) “Efficient expression and Zn(II)-dependent structure of the DNA binding domain of the yeast GAL4 protein.” Protein Engineering 3, 267-272.

Shirakawa, M., Serikawa, Y., Matsuo, H., Lee, S. J., Takimoto, M. & Kyogoku, Y. (1990) "NMR studies of structure and interaction of DNA binding proteins and their engineered derivatives." Protein Engineering, Protein Design in Basic Research, Medicine and Industry (Ikehara, M. ed) Japan Scientific Societies Press and Springer-Verlag, pp. 75-82.

Shirakawa, M., Lee, S.J., Takimoto, M., Matsuo, H., Akutsu, H. & Kyogoku, Y. (1991) “Interaction of the λ-Cro repressor protein with operator DNA fragments monitored as to amide proton magnetic resonances.” J. Mol. Struct. 242, 355-366.

Shirakawa, M., Matsuo, H. & Kyogoku, Y. (1991) “Intersubunit disulfide bonded λ-Cro protein.” Protein Engineering 4, 545-552.

Matsuo, H., Shirakawa, M., Ohkubo, T., Yamazaki, T. & Kyogoku, Y. (1991) “Assignments of 1H-15N magnetic resonances and identification of secondary structure elements of the λ-Cro repressor.” J. Biomol. NMR, 1, 191-204.

Shirakawa, M., Matsuo, H., Serikawa, Y., Suzuki, N., Kojima, C., Ohkubo, T. & Kyogoku, Y. (1992) "Conformational changes of Proteins and DNA Induced by Their Interactions."  Molecular Recognition of Nucleic Acids. (Kyogoku, Y. & Nishimura, Y. ed) Japan Scientific Societies Press - Springer Verlag. pp. 129-140.

Kyogoku, Y., Kojima, C., Lee, S. J., Tochio, H., Suzuki, N., Matsuo, H. & Shirakawa, M. (1995) "Induced structural changes in protein-DNA complexes." Methods in Enzymology (James, T. L. ed) vol. 261, pp. 524-541, Academic Press, New York.

Matsuo, H., Shirakawa, M. & Kyogoku, Y. (1995) “Three-dimensional dimer structure of the λ-Cro repressor in solution as determined by heteronuclear multidimensional NMR.” J. Mol. Biol. 254, 668-680.

Matsuo, H., Sugeta, H., Shirakawa, M. & Kyogoku, Y. (1996) “Backbone dynamics of the λ-Cro repressor protein determined by 15N relaxation measurements.  Application of an efficient method for calculation of dynamics parameters.” J. Mol. Struct. 379, 143-150.

Matsuo, H., Li, H. & Wagner, G. (1996) “A sensitive HN(CA)CO experiment for deuterated proteins.” J. Magn. Reson. B 110, 112-115.

Matsuo, H., Kupce, E., Li, H. & Wagner, G. (1996) “Use of selective Ca pulses for improvement of HN(CA)CO-D and HN(COCA)NH-D experiments.” J. Magn. Reson. B. 111, 194-198.

Matsuo, H., Kupce, E., Li, H. & Wagner, G. (1996) “Increased sensitivity in HNCA and HN(CO)CA experiments by selective Cb decoupling.” J. Magn. Reson. B. 113, 91-96.

Matsuo, H., Kupce, E. & Wagner, G. (1996) “Resolution and sensitivity gain in  HCCH-TOCSY experiments by homonuclear Cb decoupling.” J. Magn. Reson. B. 113, 190-194.

Dötsch, V., Matsuo, H. & Wagner, G. (1996) “Amino-acid-type identification for deuterated proteins with a b-carbon-edited HNCOCACB experiment.” J. Magn. Reson. B. 112, 95-100.

Matsuo, H., Li, H., McGuire, A.M., Fletcher, C.M., Gingras, A.-C., Sonenberg, N. & Wagner, G. (1997) “Structure of the translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein.” Nature Struct. Biol. 4, 717-724.

Walters, K.J., Matsuo, H. & Wagner, G. (1997) “A simple method to distinguish intermonomer nuclear overhauser effects in homodimeric proteins with C2 symmetry.” J. Am. Chem. Soc. 119, 5958-5959.

Fletcher, C.M., McGuire, A.M., Gingras, A.-C., Li, H., Matsuo, H., Sonenberg, N. & Wagner, G. (1997) “4E binding proteins inhibit the translation factor eIF4E without folded structure.” Biochemistry 37, 9-15.

Kupče, E., Matsuo, H. & Wagner, G. (1998) "Homonuclear decoupling in proteins." Modern Techniques in Protein NMR (N. R. Krishna & L. J. Berliner, eds.) Plenum Publishing Corporation, New York.

McGuire, A.M., Matsuo, H. & Wagner, G. (1998) “Internal and overall motions of the translation factor eIF4E: Cap binding and insertion in a CHAPS detergent micelle.” J. Biomol. NMR, 12, 73-88.

Chou, J.J., Matsuo, H., Duan, H. & Wagner, G. (1998) “Solution structure of the RAIDD CARD domain and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment.” Cell, 94, 171-180.

Wagner, G., Matsuo, H., Li, H., Fletcher, C. M., McGuire, A. M., Gingras, A.-C. & Sonenberg, N. (1999) " Intermolecular interactions of proteins involved in the control of gene expression." in Application of NMR to Study of Structure and Dynamics of Supramolecular Chemistry, Pons, M. (ed.), Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 247-254.

Matsuo, H., & Takagi, T. (1999) " mRNA CAP Binding Protein" Tanpakushitsu Kakusan Koso. Vol. 44, No. 4. pp 518-529.
Tochio, H., Kojima, C., Matsuo, H., Yamazaki, T. & Kyogoku, Y. (1999) “Intermolecular contacts between the λ-Cro repressor and the operator DNA characterized by nuclear magnetic resonance spectroscopy.” J. Biomol. Struc. Dyn. 16, 989-1002.

Matsuo, H., Walters, K.J., Teruya, K., Tanaka, T., Gassner, G.T., Lippard, S.J., Kyogoku, Y. & Wagner, G. (1999) “Identification by NMR spectroscopy of residues at contact surfaces in large, slowly exchanging macromolecular complexes.” J. Am. Chem. Soc. 121, 9903-9904.

Matsuo, H., Moriguchi, T., Takagi, T., Kusakabe, T., Buratowski, S., Sekine, M., Kyogoku, Y. & Wagner, G. (2000) “Efficient synthesis of 13C, 15N labeled RNA containing the cap structure m7GpppA.” J. Am. Chem. Soc. 122, 2417-2421.

Walters, K. J., Ferentz, A., Hare, B., Hidalgo, P., Jasanoff, A., Matsuo, H., & Wagner, G. (2001) " Experimental approaches for characterizing protein-protein complexes and oligomers by NMR spectroscopy " Methods in Enzymology. 339, 238-58. I have contributed to the section that described stable-isotope filter methods for observing inter-molecular NOEs.

Gross, J., Matsuo, H., Flecher, M., Sachs, A. B., & Wagner, G. (2001) "Interactions of the Eukaryotic Translation Initiation Factor eIF4E" Cold Spring Harbor Symposia on Quantitative Biology, Vol LXVI. pp 397-402. I have determined the structure of eIF4E protein.

Devany, M., Kotharu, N. P. and Matsuo, H. (2004) “Solution NMR structure of the C-terminal domain of the human protein DEK” Protein Science. 13, 2252-2259.

Devany, M., Kotharu, N. P., Matsuo, H. (2004) “Expression and isotopic labeling of structural domains of the human protein DEK” Protein Expression and Purification. Vol 40/2 pp 244-247

Knoche, F., Kappes, F., Sholten, I., Richter, N., Matsuo, H., Knippers, R. and Waldmann, T.  (2005) “The SAF-Box Domain of Chromatin Protein DEK” Nucleic Acid Research. 33(3):1101-10.

Devany, M. and Matsuo, H. (2005) “Solution NMR resonance assignment of the DNA-supercoiling domain of the human protein DEK” Journal of Biomolecular NMR. 31: 65.

Trisha M. Wise-Draper, Hillary V. Allen, Elizabeth E. Jones, Kristen B. Habash, Hiroshi Matsuo and Susanne I. Wells  (2006) “Apoptosis Inhibition by the Human DEK Oncoprotein Involves Interference with p53 Functions” Molecular and Cellular Biology, 2006, Vol. 26, No. 20.

Harris, RS., Matsuo, H. (2006) “Dancin' deaminase” Nat Struct Mol Biol. May;13(5):392-9.
Aya Kitamura, Paul J Jardine, Dwight Anderson, Shelley Grimes and Hiroshi Matsuo  (2008) “NMR Analysis of Intermolecular Base Pairing of Prohead RNA of the Ф29 DNA Packaging Motor” Nucleic Acids Research, Nucleic Acids Research, Vol 36, pp839-848

Matthew Devany, Ferdinand Kappes, Kuan-Ming Chen, David M. Markovitz and *Hiroshi Matsuo “Solution NMR structure of the N-terminal domain of the human protein DEK” Protein Science, 17, pp205-215, 2008.

Kuan-Ming Chen, Natalia A. Martemyanova, Keisuke Shindo, Yongjian Lu, *Hiroshi Matsuo and *Reuben S. Harris (*co-correspondence authors) “Extensive mutagenesis experiments corroborate a structural model for the DNA deaminase domain of APOBEC3G” FEBSletter, 581(24):4761-4766, 2007.

Brandie J. Kovaleski, Robert Kennedy, Ahmad Khorchid, Lawrence Kleiman, Hiroshi Matsuo, and Karin Musier-Forsyth*  “Critical role of helix4 of HIV-1 Capsid C-terminal domain in interactions with human Lysl-tRNA sythetase” J. B. C., 282(44):32274-32279, 2007.

Kuan-Ming Chen, Elena Harjes, Philip J. Gross, Amr Fahmi, Yongjian Lu, Keisuke Shindo, *Reuben S. Harris and *Hiroshi Matsuo (*co-correspondence authors) “Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G” Nature, Vol 452, pp116-119, March 6 (2008)

Stenglein, M. D., Matsuo, H. & Harris, R. S. (2008) “Two regions within the amino-terminal half of APOBEC3G cooperate to determine cytoplasmic localization” J Virol. published online ahead of print on 30 July 2008
Norton, J., Matsuo, H., Sturla, S. J. “Synthesis of Deoxytetrahydrouridine” J. Org. Chem., (2009), 74 (5), pp 2221–2223. PMID: 19191709

Harjes, E., P.J. Gross, K.-M. Chen, Y. Lu, K. Shindo, R. Nowarski, J.D. Gross, M. Kotler, R.S. Harris# & H. Matsuo# (2009) An extended structure of the APOBEC3G catalytic domain indicates a unique holoenzyme model. Journal of Molecular Biology, 389, 819-32. (# correspondence). PMCID: PMC2700007

Shandilya SM, Nalam MN, Nalivaika EA, Gross PJ, Valesano JC, Shindo K, Li M, Munson M, Royer WE, Harjes E, Kono T, Matsuo H, Harris RS, Somasundaran M, Schiffer CA. “Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces. Structure.” (2010) Jan 13;18(1):28-38. PubMed PMID: 20152150; PubMed Central PMCID: PMC2913127.

Albin JS, LaRue RS, Weaver JA, Brown WL, Shindo K, Harjes E, Matsuo H, Harris RS. “A single amino acid in human APOBEC3F alters susceptibility to HIV-1 Vif.” J Biol Chem. 2010 Dec 24;285(52):40785-92. Epub (2010) Oct 22. PubMed PMID: 20971849; PubMed Central PMCID: PMC3003379.

Dang Y, Abudu A, Son S, Harjes E, Spearman P, Matsuo H, Zheng YH. “Identification of a single amino acid required for APOBEC3 antiretroviral cytidine deaminase activity.” Journal of Virology. 2011 Jun;85(11):5691-5. Epub (2011) Mar 23. PubMed PMID: 21430060; PubMed Central PMCID: PMC3094948.

Dewan V, Liu T, Chen K-M, Qian Z, Niu M, Kleiman L, Mahasenan K V, Li C, Matsuo H, Pei D and Musier-Forsyth K. “Cyclic Peptide Inhibitors of HIV-1 Capsid-Human Lysyl-tRNA Synthetase Interaction” ACS Chemical Biology, (2012) Apr 20;7(4):761-9. PMID:22276994 [PubMed - in process] PMCID:PMC3330833

Harjes E, Kitamura A, Zhao W, Morais M, Jardine P.J, Grimes S and Matsuo H. “Revealing RNA claw of bacteriophage 29”  Nucleic Acids Research, DOI: GKS724, In press

Fukunishi Y, Hongo S, XLintuluoto M and and Matsuo H. “Free energy profile of APOBEC3G protein calculated by a molecular dynamics simulation” Biology, special issue: Structural and Molecular Biology of HIV, in press