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Publications 2009-2000


Close, T.J., P.R. Bhat, S. Lonardi, Y. Wu, N. Rostoks, L. Ramsay, A. Druka, N. Stein, J.T. Svensson, S. Wanamaker, S. Bozdag, M.L. Roose, M.J. Moscou, S. Chao, R. Varshney, P. Szűcs, K. Sato, P.M. Hayes, D.E. Matthews, A. Kleinhofs, G.J. Muehlbauer, J. DeYoung, D.F. Marshall, K. Madishetty, R.D. Fenton, P. Condamine,, A. Graner and R. Waugh. 2009. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582

Muñoz-Amatriaín, M., L. Cistué, Y. Xiong, H. Bilgic, A.D. Budde, M.R. Schmitt, K.P. Smith, P.M. Hayes and G.J. Muehlbauer. 2009. Structural and functional characterization of a winter malting barley. Theor. Appl. Genet. 120:971-984

Millett, B.P., Y. Xiong, S.K. Dahl, B.J. Steffenson and G.J. Muehlbauer. 2009. Wild barley accumulates distinct sets of transcripts in response to pathogens of different trophic lifestyles. Physiol. Molec. Plant Path. 74:91-98.

Xu, W.W., S. Cho, S.S. Yang, Y-T. Bolon, H. Bilgic, H. Jia, Y. Xiong and G.J. Muehlbauer. 2009. Single-feature polymorphism discovery by computing probe affinity shape powers. BMC Genetics 10:48

Schreiber, A.W., T. Sutton, R.A. Caldo, E. Kalashyan, B. Lovell, G. Mayo, G.J. Muehlbauer, A. Druka, R. Waugh, R.P. Wise, P. Langridge and U. Baumann. 2009. Comparative transcriptomics in the Triticeae. BMC Genomics 10:28

Jia, H., S. Cho and G.J. Muehlbauer. 2009. Transcriptome analysis of a wheat near-isogenic line pair carrying Fusarium head blight resistant and susceptible alleles. Mol. Plant-Microbe Interact. 22:1366-1378

Szucs, P., V.C. Blake, P.R. Bhat, S. Chao, T.J. Close, A. Cuesta-Marcos, G.J. Muehlbauer, L. Ramsay, R. Waugh and P.M. Hayes. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome 2:134-140

Jannink, J-L., H. Iwata, P.R. Bhat, S. Chao, P. Wenzl and G.J. Muehlbauer. 2009. Marker imputation in barley association studies. The Plant Genome 2:11-22

Waugh, R., Jannink, J-L., G.J. Muehlbauer and L. Ramsay. 2009. The emergence of whole genome association scans in barley. Curr. Opin. Plant Biol. 12:218-222

Dabbert, T., R. Okagaki, S. Cho, J. Boddu and G.J. Muehlbauer. 2009. The genetics of barley low-tillering mutants: absent lower laterals (als). Theor. Appl. Genet. 118:1351-1360

Schulte, D., T.J. Close, A. Graner, P. Langridge, T. Matsumoto, G. Muehlbauer, K. Sato, A.H. Schulman, R. Waugh, R.P. Wise and N. Stein. 2009. The International Barley Sequencing Consortium – at the threshold of efficient access to the barley genome. Plant Physiol. 149:142-147


Steiner, B., K. Schieszl, E.P. Litwicka, H. Kurz, M. Lemmens, H. Jia, G. Muehlbauer and H. Buerstmayr. 2008. Gene expression analysis of related wheat lines with constrasting levels of head blight resistance after Fusarium graminearum inoculation. Cereal Res. Comm. 36:267-269.

Lewis, J.M., C.A. Mackintosh, E. Gilding, S. Shin, S. Kravchenko, G. Baldridge, R. Zeyen and G.J. Muehlbauer. 2008. Overexpression of maize Teosinte Branched1 in wheat suppresses tiller development. Plant Cell Rep. 27:1217-1225.

Shin, S., C.A. Mackintosh, J. Lewis, S.J. Heinen, L. Radmer, R. Dill-Macky, G.D. Baldridge, R.J. Zeyen and G.J. Muehlbauer. 2008. Transgenic wheat expressing a barley class II chitinase gene has enhanced resistance to Fusarium Head Blight. J. Exp. Bot. 59:2371-2378.


Chang, Y-L., S. Cho, H.C. Kistler, H-C. Sheng and G.J. Muehlbauer. 2007. Bacterial artificial chromosome-based physical map of Gibberella zeae (Fusarium graminearum). Genome 50:954-962.

Cuomo, C.A., U. Güldener, J-R. Xu, F. Trail, B.G. Turgeon, A. Di Pietro, J.D. Walton, L-J. Ma, S.E. Baker, M. Rep, G. Adam, J. Antoniw, T. Baldwin, S. Calvo, Y-L. Chang, D. DeCaprio, L.R. Gale, S. Gnerre, R.S. Goswami, K. Hammond-Kosack, L.J. Harris, K. Hilburn, J.C. Kennell, S. Kroken, J.K. Magnuson, G. Mannhaupt, E. Mauceli, H.-W. Mewes, R. Mitterbauer, G. Muehlbauer, M. Münsterkötter, D. Nelson, K. O’Donnell, T. Ouellet, W. Qi, H. Quesneville, M.I.G. Roncero, K-Y. Seong, I.V. Tetko, M. Urban, C. Waalwijk, T.J. Ward, J. Yao, B.W. Birren and H.C. Kistler. 2007. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317:1400-1402.

Gyenis, L., S.J. Yun, K.P. Smith, B.J. Steffenson, E. Bossolini and G.J. Muehlbauer. 2007. Genetic architecture of quantitative trait loci associated with morphological and agronomic trait differences in a wild by cultivated barley cross. Genome 50:714-723.
Bilgic, H., S. Cho, D.F. Garvin and G.J. Muehlbauer. 2007. Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines. Genome 50:898-906.

Nduulu, L.M., A. Mesfin, G.J. Muehlbauer and K.P. Smith. 2007. Analysis of the chromosome 2(2H) region of barley associated with the correlated traits Fusarium head blight resistance and heading date. Theor. Appl. Genet. 115:561-570.

Steffenson, B.J., P. Olivera, J.K. Roy, Y. Jin, K.P. Smith and G.J. Muehlbauer. 2007. A walk on the wild side: mining wild wheat and barley collections for rust resistance genes. Aust. J. Agric. Res. 58:532-544.

Boddu, J., S. Cho and G.J. Muehlbauer. 2007. Transcriptome analysis of trichothecene- induced gene expression in barley. Mol. Plant-Microbe Interact. 20:1364-1375.

Moncada, K.M., N.J. Ehlke, G.J. Muehlbauer, C.C. Sheaffer, D.L. Wyse and L.R. DeHaan. 2007. Genetic variation in three native plant species across the state of Minnesota. Crop Sci. 47:2379-2389.

Mackintosh, C.A., J. Lewis, L.E. Radmer, S. Shin, S.J. Heinen, L.A. Smith, M.N. Wyckoff, R. Dill-Macky, C.K. Evans, S. Kravchenko, G.D. Baldridge, R.J. Zeyen and G.J. Muehlbauer. 2007. Overexpression of defense response genes enhances the resistance of wheat to Fusarium Head Blight. Plant Cell Rep. 26:479-488.


Wenzl, P., H. Li, J. Carling, M. Zhou, H. Raman, E. Paul, P. Hearnden, C. Maier, L. Xia, V. Caig, J. Ovesná, M. Cakir, D. Poulsen, J. Wang, R. Raman, K.P. Smith, G.J. Muehlbauer, K.J. Chalmers, A. Kleinhofs, E. Huttner and A. Kilian. 2006. A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and phenotypic traits. BMC Genomics 7:206.

Druka, A., G.J. Muehlbauer, I. Druka, R. Caldo, U. Baumann, A. Schreiber, N. Rostoks, R. Wise, T. Close, A. Kleinhofs, A. Graner, A. Schulman, P. Langridge, K. Sato, P. Hayes, J. McNicol, D. Marshall and R. Waugh. 2006. An atlas of gene expression from seed to seed through barley development. Funct. Integr. Genomics 6:202-211.

Güldener, U., K. Seong, J. Boddu, S. Cho, F. Trail, J-R. Xu, G. Adam, H-W. Mewes, G.J. Muehlbauer and H.C. Kistler. 2006. Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta. Fungal Genet. Biol. 43:316-325.

Muehlbauer, G.J., B.S. Bhau, N.H. Syed, S. Heinen, S. Cho, D. Marshall, S. Pateyron, N. Buisine, B. Chalhoub and A.J. Flavell. 2006. A hAT superfamily transposase domesticated by the cereal grass genome. Mol. Gen. Genomics 275:553-563.

Cho, S., D.F. Garvin and G.J. Muehlbauer. 2006. Transcriptome analysis and physical mapping of barley genes in wheat-barley chromosome addition lines. Genetics 172:1277-1285.

Yun, S.J., L. Gyenis, E. Bossolini, P.M. Hayes, I. Matus, K.P. Smith, B.J. Steffenson, R. Tuberosa and G. J. Muehlbauer. 2006. Validation of quantitative trait loci for multiple disease resistances using advanced backcross lines developed with a wild barley (Hordeum vulgare subsp. spontaneum). Crop Sci. 46:1179-1186.

Boddu, J., S. Cho, W.M. Kruger and G.J. Muehlbauer. 2006. Transcriptome analysis of the barley-Fusarium graminearum interaction. Mol. Plant-Microbe Interact. 19:407-417.

Mackintosh, C.A., D.F. Garvin, L.E. Radmer, S.J. Heinen and G.J. Muehlbauer. 2006. A model wheat cultivar for transformation to improve resistance to Fusarium Head Blight. Plant Cell Rep. 25:313-319.

Mammadov, J.A., Z. Liu, R.M. Biyashev, G.J. Muehlbauer and M.A. Saghai Maroof. 2006. Cloning, genetic and physical mapping of resistance gene analogs in barley (Hordeum vulgare). Plant Breeding 125:32-42.


Yun, S.J., L. Gyenis, P.M. Hayes, I.M. Matus, K.P. Smith, B.J. Steffenson and G.J. Muehlbauer. 2005. Quantitative trait loci for multiple disease resistance in wild barley. Crop Sci. 45:2563-2572.

Henderson, D.C., G.J. Muehlbauer and M.J. Scanlon. 2005. Radial leaves of the maize mutant ragged seedling2 retain dorsiventral anatomy. Dev. Biol. 282:455-466.

Ibrahim, A.F.M., P.E. Hedley, L. Cardle, W. Kruger, D.F. Marshall, G.J. Muehlbauer and R. Waugh. 2005. A comparative analysis of transcript abundance using SAGE and closed Affymetrix arrays. Funct. Integr. Genomics 5:163-174.


Caldwell, D.G., N. McCallum, P. Shaw, G.J. Muehlbauer, D.F. Marshall and R. Waugh. 2004. A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L.). The Plant J. 40:143-150.

Al-Saady, N.A., K.A. Torbert, L. Smith, I. Makarevitch, G. Baldridge, R.J. Zeyen, G.J. Muehlbauer, N.E. Olszewski and D.A. Somers. 2004. Tissue specificity of the sugarcane bacilliform virus promoter in oat, barley and wheat. Mol. Breed. 13:331-338.

Close, T.A., S. Wanamaker, R.A. Caldo, S.M. Turner, D.A. Ashlock, J.A. Dickerson, R.A. Wing, G.J. Muehlbauer, A. Kleinhofs and R.P. Wise. 2004. Global expression profiling in cereals: 22K barley GeneChip comes of age. Plant Physiol. 134:960-968.

Canci, P.C., L.M. Nduulu, G.J. Muehlbauer, R. Dill-Macky, D.C. Rasmusson and K.P. Smith. 2004. Validation of quantitative trait loci for fusarium head blight and kernel discoloration resistance in barley. Mol. Breed. 14:91-104.

Canci, P.C., L. Nduulu, R. Dill-Macky, G.J. Muehlbauer, D.C. Rasmusson and K.P. Smith. 2003. The genetic relationship between kernel discoloration resistance and grain protein in barley. Crop Sci. 43:1671-1679.


Mesfin, A., K.P. Smith, R. Dill-Macky, C.K. Evans, R. Waugh, C.D. Gustus and G.J. Muehlbauer. 2003. Quantitative trait loci for Fusarium head blight resistance in barley in a two-rowed by six-rowed population. Crop Sci. 43:307-318.

DeHaan, L.R., C.C. Sheaffer, N.J. Ehlke, G.J. Muehlbauer and D.L. Wyse. 2003. Illinois bundleflower genetic diversity determined by AFLP analysis. Crop Sci. 43:402-408.


Babb, S. and G.J. Muehlbauer. 2003. Genetic and morphological characterization of the barley uniculm2 (cul2) mutant. Theor. Appl. Genet. 106:846-857.Kruger, W.M., C. Pritsch, S. Chao and G.J. Muehlbauer. 2002. Functional and comparative bioinformatic analysis of expressed genes from wheat spikes infected with Fusarium graminearum. Mol. Plant-Microbe Interact. 15:445-455.


Yu, G-Y. and G.J. Muehlbauer. 2001. Benzothiadiazole-induced gene expression in wheat spikes does not provide resistance to Fusarium head blight. Physiol. Mol. Plant Path. 59:129-136.

Muehlbauer, G.J. and D.A. Somers. 2001. Genetically modified barley and the brewing industry. Technical Quarterly, Master Brewers Association of the Americas 38:145-154.Kolb, F.L., G-H. Bai, G.J. Muehlbauer, J.A. Anderson, K.P. Smith and G. Fedak. 2001. Host plant resistance genes for Fusarium head blight: mapping and manipulation with molecular markers. Crop Sci. 41:611-619.

Pritsch, C., C.P Vance, W.R. Bushnell, D.A. Somers, T.M. Hohn and G.J. Muehlbauer. 2001. Systemic expression of defense response genes in wheat spikes as a response to Fusarium graminearum infection. Physiol. Mol. Plant Path. 58:1-12.

Yu, Y., J.P. Tomkins, R. Waugh, D.A. Frisch, D. Kudrna, A. Kleinhofs, R.S. Brueggemann, G.J. Muehlbauer, R.P. Wise and R.A. Wing. 2001. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes. Theor. Appl. Genet. 101:1093-1099.


Muehlbauer G.J., O. Riera-Lizarazu, R. Kynast, D. Martin, R.L. Phillips and H.W. Rines. 2000.The maize-chromosome 3 addition line of oat exhibits expression of the maize homeobox gene Liguleless3 and alterations of cell fates. Genome 43:1055-1064.

Pritsch, C., G.J. Muehlbauer, W.R. Bushnell, D.A. Somers and C.P. Vance. 2000. Fungal development and induction of defense response genes during early infection of wheat spikes by Fusarium graminearum. Mol. Plant-Microbe Interact. 13:159-169.