DBC publications - 2010

Steroid Hormone Inactivation Is Required during the Juvenile-Adult Transition in Drosophila. Kim F. Rewitz, Naoki Yamanaka, Michael B. O'Connor. Dev. Cell 2010, Dec. 14, 19:895-902.

The expression of twisted gastrulation in postnatal mouse brain and functional implications. Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A., Neuroscience. 2010 Aug 25;169(2):920-31. Epub 2010 May 20.

The mammalian doublesex homolog DMRT1 is a transcriptional gatekeeper that controls the mitosis versus meiosis decision in male germ cells. Matson CK, Murphy MW, Griswold MD, Yoshida S, Bardwell VJ, Zarkower D. Dev Cell. 2010 Oct 19;19(4):612-24.

Cyclin-dependent kinases regulate epigenetic gene silencing through phosphorylation of EZH2. 
Chen S, Bohrer LR, Rai AN, Pan Y, Gan L, Zhou X, Bagchi A, Simon JA, Huang H. Nat Cell Biol. 2010 Nov;12(11):1108-14. Epub 2010 Oct 10.

The C. elegans developmental timing protein LIN-42 regulates diapause in response to environmental cues. Tennessen JM, Opperman KJ, Rougvie AE. Development. 2010 Oct;137(20):3501-11. Epub 2010 Sep 15.

The Drosophila gap gene giant regulates ecdysone production through specification of the PTTH-producing neurons. Ghosh A, McBrayer Z, O'Connor MB. Dev Biol. 2010 Nov 15;347(2):271-8. Epub 2010 Sep 9.

Drosophila heparan sulfate 6-O endosulfatase regulates Wingless morphogen gradient formation. Kleinschmit A, Koyama T, Dejima K, Hayashi Y, Kamimura K, Nakato H.
Dev Biol. 2010 Sep 15;345(2):204-14. Epub 2010 Jul 14.

Genome-wide analysis of DNA binding and transcriptional regulation by the mammalian Doublesex homolog DMRT1 in the juvenile testis. Murphy MW, Sarver AL, Rice D, Hatzi K, Ye K, Melnick A, Heckert LL, Zarkower D, Bardwell VJ. Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13360-5. Epub 2010 Jul 7.

Functional Genomic Identification of Genes Required for Male Gonadal Differentiation in Caenorhabditis elegans. (2010) Kalis AK, Kroetz MB, Larson KM, Zarkower D. Genetics. Mar 22. [Epub ahead of print]

EGL-5/ABD-B plays an instructive role in male cell fate determination in the C. eleganssomatic gonad. (2010) Kalis, AK, Murphy, MW, and Zarkower D. Developmental Biology, in press. PMID: 20553900

Growth and development: eukaryotes Judith Berman Curr Opin Microbiol. Author manuscript; available in PMC 2010 December 1. PMCID: PMC2792713 Published in final edited form as: Curr Opin Microbiol. 2009 December; 12(6): 589–591. Published online 2009 November 2. doi: 10.1016/j.mib.2009.10.001. Manuscript: | Free in PMC on 2010/12/01 

Increase in NF-κB Binding Affinity of the Variant C Allele of the Toll-Like Receptor 9 −1237T/C Polymorphism Is Associated with Helicobacter pylori-Induced Gastric DiseaseMike Tsz Hin Ng, Rob van't Hof, Julie C. Crockett, Mairi E. Hope, Susan Berry, John Thomson, Mairi H. McLean, Kenneth E. L. McColl, Emad M. El-Omar, and Georgina L. Hold Infect Immun. 2010 March; 78(3): 1345–1352. Published online 2009 December 28. doi: 10.1128/IAI.01226-09. PMCID: PMC2825916

CD14-159C/T and TLR9-1237T/C polymorphisms are not associated with gastric cancer risk in Caucasian populations Georgina L. Hold, Charles S. Rabkin, Marilie D. Gammon, Susan H. Berry, Malcolm G. Smith, Jolanta Lissowska, Harvey A. Risch, Wong-Ho Chow, N. Ashley G. Mowat, Thomas L. Vaughan, and Emad M. El-Omar Eur J Cancer Prev. Author manuscript; available in PMC 2010 April 1. PMCID: PMC2679029 Published in final edited form as: Eur J Cancer Prev. 2009 April; 18(2): 117–119. doi: 10.1097/CEJ.0b013e3283101292.

Role of the Transcriptional Corepressor Bcor in Embryonic Stem Cell Differentiation and Early Embryonic Development Joseph Alan Wamstad, Connie Marie Corcoran, Anne Marjorie Keating, and Vivian J. Bardwell PLoS ONE. 2008; 3(7): e2814. Published online 2008 July 30. doi: 10.1371/journal.pone.0002814. PMCID: PMC2535898

SUGAR-INSENSITIVE3, a RING E3 Ligase, Is a New Player in Plant Sugar ResponseYadong Huang, Chun Yao Li, Donna L. Pattison, William M. Gray, Sungjin Park, and Susan I. Gibson Plant Physiol. 2010 April; 152(4): 1889–1900. Published online 2010 February 10. doi: 10.1104/pp.109.150573. PMCID: PMC2850021

Tanning, Skin Cancer Risk, and Prevention: A Content Analysis of Eight Popular Magazines that Target Female Readers, 1997–2006 Hyunyi Cho, Jennifer G. Hall, Carin Kosmoski, Rebekah L. Fox, and Teresa Mastin Health Commun. Author manuscript; available in PMC 2010 March 11. PMCID: PMC2836591 Published in final edited form as: Health Commun. 2010 January 1; 25(1): 1–10. doi: 10.1080/10410230903265938.

Spectrin mutations that cause spinocerebellar ataxia type 5 impair axonal transport and induce neurodegeneration in Drosophila Damaris N. Lorenzo, Min-gang Li, Sarah E. Mische, Karen R. Armbrust, Laura P. W. Ranum, and Thomas S. Hays J Cell Biol. 2010 April 5; 189(1): 143–158. doi: 10.1083/jcb.200905158. PMCID: 2854382

Thermally induced failure of polymer dielectrics    Johnson RS, Cicotte KN, Mahoney PJ, Tuttle BA, Dirk SM.   Adv Mater. 2010 Apr 18;22(15):1750-3. No abstract available. PMID: 20496409 [PubMed - in process]

The replication stress response and the ubiquitin system: a new link in maintaining genomic integrity.  Koepp DM.   Cell Div. 2010 Mar 10;5:8.PMID: 20219119 [PubMed - in process]

Activation of the S-phase checkpoint inhibits degradation of the F-box protein Dia2  Kile AC, Koepp DM.  Mol Cell Biol. 2010 Jan;30(1):160-71. Epub .PMID: 19858292 [PubMed - indexed for MEDLINE]

Sleeping beauty-mediated somatic mutagenesis implicates CSF1 in the formation of high-grade astrocytomas  Bender AM, Collier LS, Rodriguez FJ, Tieu C, Larson JD, Halder C, Mahlum E, Kollmeyer TM, Akagi K, Sarkar G, Largaespada DA, Jenkins RB. Cancer Res. 2010 May 1;70(9):3557-65. Epub 2010 Apr 13.PMID: 20388773 [PubMed - indexed for MEDLINE]

 Efficient mammalian germline transgenesis by cis-enhanced Sleeping Beauty transposition. Carlson DF, Geurts AM, Garbe JR, Park CW, Rangel-Filho A, O'Grady SM, Jacob HJ, Steer CJ, Largaespada DA, Fahrenkrug SC. Transgenic Res. 2010 Mar 30. [Epub ahead of print]PMID: 20352328 [PubMed - as supplied by publisher]

A transposon and transposase system for human application.   Hackett PB, Largaespada DA, Cooper LJ.     Mol Ther. 2010 Apr;18(4):674-83. Epub 2010 Jan 26.PMID: 20104209 [PubMed - in process]

Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach.   Mattison J, Kool J, Uren AG, de Ridder J, Wessels L, Jonkers J, Bignell GR, Butler A, Rust AG, Brosch M, Wilson CH, van der Weyden L, Largaespada DA, Stratton MR, Futreal PA, van Lohuizen M, Berns A, Collier LS, Hubbard T, Adams DJ.  Cancer Res. 2010 Feb 1;70(3):883-95. Epub 2010 Jan 26.PMID: 20103622 [PubMed - indexed for MEDLINE]

Activation of ADF/cofilin mediates attractive growth cone turning toward nerve growth factor and netrin-1. Marsick BM, Flynn KC, Santiago-Medina M, Bamburg JR, Letourneau PC.    Dev Neurobiol. 2010 Apr 29. [Epub ahead of print]PMID: 20506164 [PubMed - as supplied by publisher]

Echocardiographic assessment of cardiac morphology and function in Xenopus.  Bartlett HL, Escalera RB 2nd, Patel SS, Wedemeyer EW, Volk KA, Lohr JL, Reinking BE.         Comp Med. 2010;60(2):107-13.PMID: 20412684 [PubMed - in process]

WNT5A mutations in patients with autosomal dominant Robinow syndrome.  Person AD, Beiraghi S, Sieben CM, Hermanson S, Neumann AN, Robu ME, Schleiffarth JR, Billington CJ Jr, van Bokhoven H, Hoogeboom JM, Mazzeu JF, Petryk A, Schimmenti LA, Brunner HG, Ekker SC, Lohr JL.   Dev Dyn. 2010 Jan;239(1):327-37.PMID: 19918918 [PubMed - indexed for MEDLINE]

Interaction of MTG family proteins with NEUROG2 and ASCL1 in the developing nervous system.   Aaker JD, Patineau AL, Yang HJ, Ewart DT, Nakagawa Y, McLoon SC, Koyano-Nakagawa N.     Neurosci Lett. 2010 Apr 19;474(1):46-51. Epub 2010 Mar 7.PMID: 20214951 [PubMed - indexed for MEDLINE]

Regulation of mTORC1 by the rab and ARF GTPases.   Li L, Kim E, Yuan H, Inoki K, Goraksha-Hicks P, Schiesher RL, Neufeld TP, Guan KL.   J Biol Chem. 2010 May 10. [Epub ahead of print]PMID: 20457610 [PubMed - as supplied by publisher]Free Article

Autophagy takes flight in Drosophila.  Chang YY, Neufeld TP.   FEBS Lett. 2010 Apr 2;584(7):1342-9. Epub 2010 Jan 13. Review.PMID: 20079355 [PubMed - indexed for MEDLINE]

TOR-dependent control of autophagy: biting the hand that feeds.  Neufeld TP.   Curr Opin Cell Biol. 2010 Apr;22(2):157-68. Epub 2009 Dec 16.PMID: 20006481 [PubMed - in process]

The evolution of sex: a perspective from the fungal kingdom.   Lee SC, Ni M, Li W, Shertz C, Heitman J.   Microbiol Mol Biol Rev. 2010 Jun;74(2):298-340.PMID: 20508251 [PubMed - in process]

Transcriptional silencing of {gamma}-globin by BCL11A involves long-range interactions and cooperation with SOX6.  Xu J, Sankaran VG, Ni M, Menne TF, Puram RV, Kim W, Orkin SH.  Genes Dev. 2010 Apr 15;24(8):783-98.PMID: 20395365 [PubMed - indexed for MEDLINE]Free PMC Article

SHORT HYPOCOTYL UNDER BLUE1 truncations and mutations alter its association with a signaling protein complex in Arabidopsis.   Zhou Y, Ni M.  Plant Cell. 2010 Mar;22(3):703-15. Epub 2010 Mar 30.PMID: 20354198 [PubMed - in process]

Nucleosome dynamics define transcriptional enhancers.    He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS.   Nat Genet. 2010 Apr;42(4):343-7. Epub 2010 Mar 7.PMID: 20208536 [PubMed - indexed for MEDLINE]

Cell surface relocalization of the endoplasmic reticulum chaperone and unfolded protein response regulator GRP78/BiP. Zhang Y, Liu R, Ni M, Gill P, Lee AS.  J Biol Chem. 2010 May 14;285(20):15065-75. Epub 2010 Mar 5.PMID: 20208072 [PubMed - in process]

The expression of Twisted gastrulation in postnatal mouse brain and functional implications  Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A.    Neuroscience. 2010 May 18. [Epub ahead of print]PMID: 20493240 [PubMed - as supplied by publisher]

Canonical TGF-beta signaling is required for the balance of excitatory/inhibitory transmission within the hippocampus and prepulse inhibition of acoustic startle.   Sun M, Gewirtz JC, Bofenkamp L, Wickham RJ, Ge H, O'Connor MB.
J Neurosci. 2010 Apr 28;30(17):6025-35.PMID: 20427661 [PubMed - indexed for MEDLINE]

Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.  Umulis DM, Shimmi O, O'Connor MB, Othmer HG.   Dev Cell. 2010 Feb 16;18(2):260-74.PMID: 20159596 [PubMed - indexed for MEDLINE]

A multi-time-scale analysis of chemical reaction networks: I. Deterministic systems.  Lee CH, Othmer HG.  J Math Biol. 2010 Mar;60(3):387-450. Epub 2009 Apr 7.PMID: 19350241 [PubMed - indexed for MEDLINE]

O-GlcNAc protein modification in plants: Evolution and function.  Olszewski NE, West CM, Sassi SO, Hartweck LM. Biochim Biophys Acta. 2010 Feb;1800(2):49-56. Epub 2009 Dec 2. Review.PMID: 19961900 [PubMed - indexed for MEDLINE]

The expression of Twisted gastrulation in postnatal mouse brain and functional implications.  Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A.  Neuroscience. 2010 May 18. [Epub ahead of print]PMID: 20493240 [PubMed - as supplied by publisher]

Bone morphogenic protein 2 directly enhances differentiation of murine osteoclast precursors  Jensen ED, Pham L, Billington CJ Jr, Espe K, Carlson AE, Westendorf JJ, Petryk A, Gopalakrishnan R, Mansky K.  J Cell Biochem. 2010 Mar 1;109(4):672-82.PMID: 20039313 [PubMed - in process]

miRNAs give worms the time of their lives: small RNAs and temporal control in Caenorhabditis elegans.  Resnick TD, McCulloch KA, Rougvie AE.  Dev Dyn. 2010 May;239(5):1477-89.PMID: 20232378 [PubMed - in process]

Two-Tier Approach to the Newborn Screening of Methylenetetrahydrofolate Reductase Deficiency and Other Remethylation Disorders with Tandem Mass Spectrometry.  Tortorelli S, Turgeon CT, Lim JS, Baumgart S, Day-Salvatore DL, Abdenur J, Bernstein JA, Lorey F, Lichter-Konecki U, Oglesbee D, Raymond K, Matern D, Schimmenti L, Rinaldo P, Gavrilov DK.       J Pediatr. 2010 Apr 13. [Epub ahead of print]PMID: 20394947 [PubMed - as supplied by publisher]

Next generation sequencing in research and diagnostics of ocular birth defects.  Raca G, Jackson C, Warman B, Bair T, Schimmenti LA.  Mol Genet Metab. 2010 Jun;100(2):184-92. Epub 2010 Mar 15.PMID: 20359920 [PubMed - in process]  

TLR9 polymorphisms are associated with altered IFN-gamma levels in children with cerebral malari.  Sam-Agudu NA, Greene JA, Opoka RO, Kazura JW, Boivin MJ, Zimmerman PA, Riedesel MA, Bergemann TL, Schimmenti LA, John CC.   Am J Trop Med Hyg. 2010 Apr;82(4):548-55.PMID: 20348497 [PubMed - indexed for MEDLINE]

The role of Cdx2 in Barrett's metaplasia.  Colleypriest BJ, Farrant JM, Slack JM, Tosh D.   Biochem Soc Trans. 2010 Apr;38(2):364-9.PMID: 20298184 [PubMed - in process]

Barrett's metaplasia: molecular mechanisms and nutritional influences.  Slack JM, Colleypriest BJ, Quinlan JM, Yu WY, Farrant MJ, Tosh D.  Biochem Soc Trans. 2010 Apr;38(2):313-9.PMID: 20298175 [PubMed - in process]

Isolation and culture of embryonic pancreas and liver  Burke ZD, Li WC, Slack JM, Tosh D.  Methods Mol Biol. 2010;633:91-9.PMID: 20204622 [PubMed - indexed for MEDLINE]

Cytotoxicity Associated with Artemis Overexpression After Lentiviral Vector-Mediated Gene Transfer.  Multhaup M, Karlen AD, Swanson DL, Wilber A, Somia NV, Cowan MJ, McIvor RS.    Hum Gene Ther. 2010 Jun 1. [Epub ahead of print]PMID: 20163250 [PubMed - as supplied by publisher]

Identification of NK cell receptor ligands using a signaling reporter system.  Iizuka YM, Somia NV, Iizuka K.  Methods Mol Biol. 2010;612:285-97.PMID: 20033648 [PubMed - indexed for MEDLINE]

An unconventional myosin required for cell polarization and chemotaxis.  Breshears LM, Wessels D, Soll DR, Titus MA.    Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6918-23. Epub 2010 Mar 29.PMID: 20351273 [PubMed - indexed for MEDLINE]

Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes.  Yang SS, Xu WW, Tesfaye M, Lamb JF, Jung HJ, Vandenbosch KA, Vance CP, Gronwald JW.       BMC Genomics. 2010 May 24;11(1):323. [Epub ahead of print]PMID: 20497574 [PubMed - as supplied by publisher]Free Article

Functional Genomic Identification of Genes Required for Male Gonadal Differentiation in Caenorhabditis elegans.   Kalis AK, Kroetz MB, Larson KM, Zarkower D.     Genetics. 2010 Mar 22. [Epub ahead of print]PMID: 20308279 [PubMed - as supplied by publisher]

Cohesin is needed for bipolar mitosis in human cells.  Díaz-Martínez LA, Beauchene NA, Furniss K, Esponda P, Giménez-Abián JF, Clarke DJ.   Cell Cycle. 2010 May;9(9):1764-73. Epub 2010 May 15.PMID: 20436271 [PubMed - in process]

Determinants of Rad21 localization at the centrosome in human cells.  Giménez-Abián JF, Díaz-Martínez LA, Beauchene NA, Hsu WS, Tsai HJ, Clarke DJ. Cell Cycle. 2010 May;9(9):1759-63. Epub 2010 May 15.PMID: 20404544 [PubMed - in process]

Rad21 is required for centrosome integrity in human cells independently of its role in chromosome cohesion. Beauchene NA, Díaz-Martínez LA, Furniss K, Hsu WS, Tsai HJ, Chamberlain C, Esponda P, Giménez-Abián JF, Clarke DJ. Cell Cycle. 2010 May;9(9):1774-80. Epub 2010 May 15.PMID: 20404533 [PubMed - in process]

Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber.  Betancur L, Singh B, Rapp RA, Wendel JF, Marks MD, Roberts AW, Haigler CH. J Integr Plant Biol. 2010 Feb;52(2):205-20.PMID: 20377682 [PubMed - in process]

Distortion of trichome morphology by the hairless mutation of tomato affects leaf surface chemistry Kang JH, Shi F, Jones AD, Marks MD, Howe GA. J Exp Bot. 2010 Feb;61(4):1053-64. Epub 2009 Dec 16.PMID: 20018901 [PubMed - indexed for MEDLINE]

TrichOME: a comparative omics database for plant trichomes.  Dai X, Wang G, Yang DS, Tang Y, Broun P, Marks MD, Sumner LW, Dixon RA, Zhao PX.    Plant Physiol. 2010 Jan;152(1):44-54. Epub 2009 Nov 25.PMID: 19939948 [PubMed - indexed for MEDLINE]

Chromatin compaction at Hox loci: a polycomb tale beyond histone tails  Simon JA. Mol Cell. 2010 May 14;38(3):321-2.PMID: 20471938 [PubMed - in process]

Comparative analysis of chromatin binding by Sex Comb on Midleg (SCM) and other polycomb group repressors at a Drosophila Hox gene.    Wang L, Jahren N, Miller EL, Ketel CS, Mallin DR, Simon JA.  Mol Cell Biol. 2010 Jun;30(11):2584-93. Epub 2010 Mar 29.PMID: 20351181 [PubMed - indexed for MEDLINE]

Patterned assembly and neurogenesis in the chick dorsal root ganglion.  George L, Kasemeier-Kulesa J, Nelson BR, Koyano-Nakagawa N, Lefcort F. J Comp Neurol. 2010 Feb 15;518(4):405-22.PMID: 20017208 [PubMed - indexed for MEDLINE]

A microinjection technique for targeting regions of embryonic and neonatal mouse brain in vivo  Davidson S, Truong H, Nakagawa Y, Giesler GJ Jr. Brain Res. 2010 Jan 11;1307:43-52. Epub 2009 Oct 17.PMID: 19840780 [PubMed - indexed for MEDLINE]