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Workshop schedule August 2016

 

 

CMSP Proteomics Workshop Itinerary

 

August 9 – 11, 2016

 

Tuesday August 9, 2016      
(Gortner Lab Room No. 239)
9:00 – 9:15      Welcome  Pratik Jagtap (Gort 239)
9:15 - 10:00    Introduction to Proteomics I Tim Griffin (Gort 239)
10:00– 10:45   Introduction to Proteomics II Susan Van Riper (Gort 239)
10:45– 11:00   Break
11:00– 12:30   Sample Preparation Basics Todd Markowski (Gort 239)
 
12:30 – 1:30         Lunch Break
 
(Gortner Lab Rom No. 43)
1:30 – 4:00         Workshops Ia, Ib and Ic (Gort 43) (split into groups)*
 
Workshop Ia*     Stage-tip and representative MALDI analysis  Todd Markowski            
Workshop Ib*     Protein estimation methods                            Stephen Harvey
Workshop Ic*    Sample Preparation Technologies and Instrumentation Bruce Withuhn

           

AUGUST 10, 2016 Wednesday
(Gortner Lab Room No. 239)
9:00 – 9:45         Introduction to Mass Spectrometry: Mass Spec 101Tom Krick (Gort 239)
9:50 – 11:15       Tandem MS and Intro to Liquid Chromatography-MS LeeAnn Higgins (Gort 239)
11:15 – 11:30     Break
11:30 – 12:30    Specialized Applications in mass spectrometry  Bruce Withuhn (Gort 239)
 
12:30 – 1:30     Lunch Break
 
(Gortner Lab Rom No. 43)
1:30 – 4:00      Workshops IIa, IIb, IIc (Gort 43) (split into groups)*
                             (Take Breaks as necessary in between workstations)
Workshop IIa      ESI-Ion Trap MS: Peptide MS/MS and intact protein (Gort 43) Tom Krick
Workshop IIb      ESI-Orbitrap MS: Ultra high accuracy MS and MS/MS (Gort 43) LeeAnn Higgins
Workshop IIc      Manual interpretation of MS/MS spectrum  (Gort 43) Candace Guerrero

 

AUGUST 11, 2016 Thursday
(Gortner Lab Room No. 239)
9:00 – 9:50      ProteoInformatics Overview Pratik Jagtap (Gort 239)
9:50 - 10:00    Break
10:00 – 11:15   Protein Identification  LeeAnn Higgins (Gort 239)
11:15 – 12:15   Protein Validation and Quantification  Susan Van Riper (Gort 239)
12:15 – 12:30   Publishing Your Data  Pratik Jagtap (Gort 239)
 
12:30 – 1:30    Lunch Break
 
1:30 – 4:30     ProteoInformatics Workshop  (Cargill Building SCI 138 (computer lab))
1:30 to 2:30       1) MALDI-TOF Results: Peptide Mass Fingerprinting    LeeAnn Higgins
2:30 to 3:30       2) Using Galaxy-P for MS/MS Search and related workflows    Pratik Jagtap
3:30 to 4:30       3) Scaffold Review                                                                 Susan van Riper