Postdoc: Harvard U.
visiting prof.: Stuttgart U. ('95-'96), KTH Stockholm ('02-'03), Seoul Nat'l U. ('09-'13).
Job opening for BS/MS level candidates
- More about protein engineering
Biocatalysis uses enzymes for unnatural purposes - synthesis of drugs, chemical intermediates & biofuels. Using enzymes creates more efficient syntheses that minimize pollution and avoid toxic and non-selective chemical reagents.
Nature's enzymes have evolved to efficiently catalyze biochemical reactions, so they need modification for other applications. Protein engineering makes these modifications. Protein engineering can increase the stability, selectivity, reaction rate and can even change the normal reaction catalyzes to a different reaction type.
Current protein engineering dramatically improves protein properties. Engineered proteins can be millions of times better for their new application as compared to natural proteins. In one case, researchers replaced 15% of the amino acids in the protein. This is equivalent to engineering a mouse into a human, since mouse proteins typically differ from human proteins by 15%.
Examples of current research:
- The biggest barrier to converting inexpensive biomass to fuels is efficiently extracting the sugars from biomass. The lignin component of biomass is like the glue in fiberglass that protects the sugar fibers. Peracetic acid is strong oxidant that can break down lignin, but it is too expensive to manufacture. We are engineering enzymes to efficiently produce peracetic acid. Besides biofuel manufacture, enzyme-generated peracetic acid may be a green oxidizing reagent for organic synthesis and a water disinfectant for developing countries.
- As biomass replaces petroleum as the feedstock for fuels, it should also be the feedstock for chemicals. One promising source is lignin, a waste product from cellulosic biofuels manufacture. To use lignin fragments, we are inventing new biochemical pathways, even new biochemical reactions to convert them into starting materials for chemical synthesis.
- Current protein engineering starts with enzymes from nature, but ancestral enzymes may be a better starting point. Current specialist enzymes evolved from ancestral stem-cell-like enzymes that catalyzed many related reactions; they were generalists. Using reconstructed ancestral enzymes as the starting point may yield new specialist enzymes more quickly.