Genetics, Cell Biology, and Development

Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.  Baller JA, Gao J, Voytas DF., Proc Natl Acad Sci U S A. 2011 Jul 25. [Epub ahead of print], PMID: 21788500 Abstract

DMRT1 prevents female reprogramming in the postnatal mammalian testis. Matson CK, Murphy MW, Sarver AL, Griswold MD, Bardwell VJ, Zarkower D., Nature. 2011 Jul 20;476(7358):101-4. doi: 10.1038/nature10239., PMID: 21775990 Abstract

Nitric oxide directly regulates gene expression during Drosophila development: need some gas to drive into metamorphosis? Yamanaka N, O'Connor MB., Genes Dev. 2011 Jul 15;25(14):1459-63., PMID: 21764850 Abstract

Apiology: Royal Secrets in the Queen's Fat Body. Yamanaka N, O'Connor MB., Curr Biol. 2011 Jul 12;21(13):R510-2., PMID: 21741589 Abstract

Radical Acceleration of Nuclear Reprogramming by Chromatin Remodeling With the Transactivation Domain of MyoD.  Hirai H, Tani T, Katoku-Kikyo N, Kellner S, Karian P, Firpo M, Kikyo N., Stem Cells. 2011 Jul 5. doi: 10.1002/stem.684. [Epub ahead of print], PMID: 21732495 Abstract

Neuroendocrine regulation of Drosophila metamorphosis requires TGFbeta/Activin signaling. Gibbens YY, Warren JT, Gilbert LI, O'Connor MB., Development. 2011 Jul;138(13):2693-703. Epub 2011 May 25., PMID: 21613324 Abstract

Modulation of TGF-{beta} signaling by endoglin in murine hemangioblast development and primitive hematopoiesis. Zhang L, Magli A, Catanese J, Xu Z, Kyba M,Perlingeiro RC., Blood. 2011 Jul 7;118(1):88-97. Epub 2011 May 20., PMID: 21602526 Abstract

Development. Planarian pluripotency. Slack JM., Science. 2011 May 13;332(6031):799-800. Abstract

Assessment of the myogenic stem cell compartment following transplantation of Pax3/Pax7-induced embryonic stem cell-derived progenitors. Darabi R, Santos FN, Filareto A, Pan W, Koene R, Rudnicki MA, Kyba M, Perlingeiro RC., Stem Cells. 2011 May;29(5):777-90. doi: 10.1002/stem.625., PMID: 21374762 Abstract

Origin of muscle satellite cells in the Xenopus embryo. Daughters RS, Chen Y, Slack JM., Development. 2011 Mar;138(5):821-30. Epub 2011 Jan 26., PMID: 21270051 Abstract

Nkx2-5 represses gata1 gene expression and modulates the cellular fate of cardiac progenitors during embryogenesis. Caprioli A, Koyano-Nakagawa N, Iacovino M, Shi X, Ferdous A, Harvey RP, Olson EN, Kyba M, Garry DJ. Circulation. 2011 Apr 19;123(15):1633-41. Epub 2011 Apr 4. PMID:21464046  [PubMed - in process]

Novel contact-dependent bone morphogenetic protein (BMP) signaling mediated by heparan sulfate proteoglycans. Dejima K, Kanai MI, Akiyama T, Levings DC, Nakato H, J Biol Chem. 2011 Mar 23. [Epub ahead of print], PMID: 21454551 [PubMed - as supplied by publisher] Abstract

Origin of muscle satellite cells in the Xenopus embryo. Daughters RS, Chen Y, Slack JM. Development. 2011 Mar;138(5):821-30. Epub 2011 Jan 26. PMID: 21270051 Abstract

Neural integrity is maintained by dystrophin in C. elegans. Zhou S, Chen L., J Cell Biol. 2011 Jan 24;192(2):349-63. Epub 2011 Jan 17. PMID: 21242290 Abstract

HoxA3 is an apical regulator of haemogenic endothelium. Iacovino M, Chong D, Szatmari I, Hartweck L, Rux D, Caprioli A, Cleaver O, Kyba M. Nat Cell Biol. 2011 Jan;13(1):72-8. Epub 2010 Dec 19. PMID: 21170035 Abstract

HYPOSENSITIVE TO LIGHT, an alpha/beta fold protein, acts downstream of ELONGATED HYPOCOTYL 5 to regulate seedling de-etiolation. Sun XD, Ni M. Mol Plant. 2011 Jan;4(1):116-26. Epub 2010 Sep 23. PMID: 20864454 Abstract

Steroid Hormone Inactivation Is Required during the Juvenile-Adult Transition in Drosophila. Kim F. Rewitz, Naoki Yamanaka, Michael B. O'Connor. Dev. Cell 2010, Dec. 14, 19:895-902.

The expression of twisted gastrulation in postnatal mouse brain and functional implications. Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A., Neuroscience. 2010 Aug 25;169(2):920-31. Epub 2010 May 20.

The mammalian doublesex homolog DMRT1 is a transcriptional gatekeeper that controls the mitosis versus meiosis decision in male germ cells. Matson CK, Murphy MW, Griswold MD, Yoshida S, Bardwell VJ, Zarkower D. Dev Cell. 2010 Oct 19;19(4):612-24.

Cyclin-dependent kinases regulate epigenetic gene silencing through phosphorylation of EZH2. 
Chen S, Bohrer LR, Rai AN, Pan Y, Gan L, Zhou X, Bagchi A, Simon JA, Huang H. Nat Cell Biol. 2010 Nov;12(11):1108-14. Epub 2010 Oct 10.

The C. elegans developmental timing protein LIN-42 regulates diapause in response to environmental cues. Tennessen JM, Opperman KJ, Rougvie AE. Development. 2010 Oct;137(20):3501-11. Epub 2010 Sep 15.

The Drosophila gap gene giant regulates ecdysone production through specification of the PTTH-producing neurons. Ghosh A, McBrayer Z, O'Connor MB. Dev Biol. 2010 Nov 15;347(2):271-8. Epub 2010 Sep 9.

Drosophila heparan sulfate 6-O endosulfatase regulates Wingless morphogen gradient formation. Kleinschmit A, Koyama T, Dejima K, Hayashi Y, Kamimura K, Nakato H.
Dev Biol. 2010 Sep 15;345(2):204-14. Epub 2010 Jul 14.

Genome-wide analysis of DNA binding and transcriptional regulation by the mammalian Doublesex homolog DMRT1 in the juvenile testis. Murphy MW, Sarver AL, Rice D, Hatzi K, Ye K, Melnick A, Heckert LL, Zarkower D, Bardwell VJ. Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13360-5. Epub 2010 Jul 7.

Functional Genomic Identification of Genes Required for Male Gonadal Differentiation in Caenorhabditis elegans. (2010) Kalis AK, Kroetz MB, Larson KM, Zarkower D. Genetics. Mar 22. [Epub ahead of print]

EGL-5/ABD-B plays an instructive role in male cell fate determination in the C. eleganssomatic gonad. (2010) Kalis, AK, Murphy, MW, and Zarkower D. Developmental Biology, in press. PMID: 20553900

Growth and development: eukaryotes Judith Berman Curr Opin Microbiol. Author manuscript; available in PMC 2010 December 1. PMCID: PMC2792713 Published in final edited form as: Curr Opin Microbiol. 2009 December; 12(6): 589–591. Published online 2009 November 2. doi: 10.1016/j.mib.2009.10.001. Manuscript: | Free in PMC on 2010/12/01 

Increase in NF-κB Binding Affinity of the Variant C Allele of the Toll-Like Receptor 9 −1237T/C Polymorphism Is Associated with Helicobacter pylori-Induced Gastric DiseaseMike Tsz Hin Ng, Rob van't Hof, Julie C. Crockett, Mairi E. Hope, Susan Berry, John Thomson, Mairi H. McLean, Kenneth E. L. McColl, Emad M. El-Omar, and Georgina L. Hold Infect Immun. 2010 March; 78(3): 1345–1352. Published online 2009 December 28. doi: 10.1128/IAI.01226-09. PMCID: PMC2825916

CD14-159C/T and TLR9-1237T/C polymorphisms are not associated with gastric cancer risk in Caucasian populations Georgina L. Hold, Charles S. Rabkin, Marilie D. Gammon, Susan H. Berry, Malcolm G. Smith, Jolanta Lissowska, Harvey A. Risch, Wong-Ho Chow, N. Ashley G. Mowat, Thomas L. Vaughan, and Emad M. El-Omar Eur J Cancer Prev. Author manuscript; available in PMC 2010 April 1. PMCID: PMC2679029 Published in final edited form as: Eur J Cancer Prev. 2009 April; 18(2): 117–119. doi: 10.1097/CEJ.0b013e3283101292.

Role of the Transcriptional Corepressor Bcor in Embryonic Stem Cell Differentiation and Early Embryonic Development Joseph Alan Wamstad, Connie Marie Corcoran, Anne Marjorie Keating, and Vivian J. Bardwell PLoS ONE. 2008; 3(7): e2814. Published online 2008 July 30. doi: 10.1371/journal.pone.0002814. PMCID: PMC2535898

SUGAR-INSENSITIVE3, a RING E3 Ligase, Is a New Player in Plant Sugar ResponseYadong Huang, Chun Yao Li, Donna L. Pattison, William M. Gray, Sungjin Park, and Susan I. Gibson Plant Physiol. 2010 April; 152(4): 1889–1900. Published online 2010 February 10. doi: 10.1104/pp.109.150573. PMCID: PMC2850021

Tanning, Skin Cancer Risk, and Prevention: A Content Analysis of Eight Popular Magazines that Target Female Readers, 1997–2006 Hyunyi Cho, Jennifer G. Hall, Carin Kosmoski, Rebekah L. Fox, and Teresa Mastin Health Commun. Author manuscript; available in PMC 2010 March 11. PMCID: PMC2836591 Published in final edited form as: Health Commun. 2010 January 1; 25(1): 1–10. doi: 10.1080/10410230903265938.

Spectrin mutations that cause spinocerebellar ataxia type 5 impair axonal transport and induce neurodegeneration in Drosophila Damaris N. Lorenzo, Min-gang Li, Sarah E. Mische, Karen R. Armbrust, Laura P. W. Ranum, and Thomas S. Hays J Cell Biol. 2010 April 5; 189(1): 143–158. doi: 10.1083/jcb.200905158. PMCID: 2854382

Thermally induced failure of polymer dielectrics    Johnson RS, Cicotte KN, Mahoney PJ, Tuttle BA, Dirk SM.   Adv Mater. 2010 Apr 18;22(15):1750-3. No abstract available. PMID: 20496409 [PubMed - in process]

The replication stress response and the ubiquitin system: a new link in maintaining genomic integrity.  Koepp DM.   Cell Div. 2010 Mar 10;5:8.PMID: 20219119 [PubMed - in process]

Activation of the S-phase checkpoint inhibits degradation of the F-box protein Dia2  Kile AC, Koepp DM.  Mol Cell Biol. 2010 Jan;30(1):160-71. Epub .PMID: 19858292 [PubMed - indexed for MEDLINE]

Sleeping beauty-mediated somatic mutagenesis implicates CSF1 in the formation of high-grade astrocytomas  Bender AM, Collier LS, Rodriguez FJ, Tieu C, Larson JD, Halder C, Mahlum E, Kollmeyer TM, Akagi K, Sarkar G, Largaespada DA, Jenkins RB. Cancer Res. 2010 May 1;70(9):3557-65. Epub 2010 Apr 13.PMID: 20388773 [PubMed - indexed for MEDLINE]

 Efficient mammalian germline transgenesis by cis-enhanced Sleeping Beauty transposition. Carlson DF, Geurts AM, Garbe JR, Park CW, Rangel-Filho A, O'Grady SM, Jacob HJ, Steer CJ, Largaespada DA, Fahrenkrug SC. Transgenic Res. 2010 Mar 30. [Epub ahead of print]PMID: 20352328 [PubMed - as supplied by publisher]

A transposon and transposase system for human application.   Hackett PB, Largaespada DA, Cooper LJ.     Mol Ther. 2010 Apr;18(4):674-83. Epub 2010 Jan 26.PMID: 20104209 [PubMed - in process]

Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach.   Mattison J, Kool J, Uren AG, de Ridder J, Wessels L, Jonkers J, Bignell GR, Butler A, Rust AG, Brosch M, Wilson CH, van der Weyden L, Largaespada DA, Stratton MR, Futreal PA, van Lohuizen M, Berns A, Collier LS, Hubbard T, Adams DJ.  Cancer Res. 2010 Feb 1;70(3):883-95. Epub 2010 Jan 26.PMID: 20103622 [PubMed - indexed for MEDLINE]

Activation of ADF/cofilin mediates attractive growth cone turning toward nerve growth factor and netrin-1. Marsick BM, Flynn KC, Santiago-Medina M, Bamburg JR, Letourneau PC.    Dev Neurobiol. 2010 Apr 29. [Epub ahead of print]PMID: 20506164 [PubMed - as supplied by publisher]

Echocardiographic assessment of cardiac morphology and function in Xenopus.  Bartlett HL, Escalera RB 2nd, Patel SS, Wedemeyer EW, Volk KA, Lohr JL, Reinking BE.         Comp Med. 2010;60(2):107-13.PMID: 20412684 [PubMed - in process]

WNT5A mutations in patients with autosomal dominant Robinow syndrome.  Person AD, Beiraghi S, Sieben CM, Hermanson S, Neumann AN, Robu ME, Schleiffarth JR, Billington CJ Jr, van Bokhoven H, Hoogeboom JM, Mazzeu JF, Petryk A, Schimmenti LA, Brunner HG, Ekker SC, Lohr JL.   Dev Dyn. 2010 Jan;239(1):327-37.PMID: 19918918 [PubMed - indexed for MEDLINE]

Interaction of MTG family proteins with NEUROG2 and ASCL1 in the developing nervous system.   Aaker JD, Patineau AL, Yang HJ, Ewart DT, Nakagawa Y, McLoon SC, Koyano-Nakagawa N.     Neurosci Lett. 2010 Apr 19;474(1):46-51. Epub 2010 Mar 7.PMID: 20214951 [PubMed - indexed for MEDLINE]

Regulation of mTORC1 by the rab and ARF GTPases.   Li L, Kim E, Yuan H, Inoki K, Goraksha-Hicks P, Schiesher RL, Neufeld TP, Guan KL.   J Biol Chem. 2010 May 10. [Epub ahead of print]PMID: 20457610 [PubMed - as supplied by publisher]Free Article

Autophagy takes flight in Drosophila.  Chang YY, Neufeld TP.   FEBS Lett. 2010 Apr 2;584(7):1342-9. Epub 2010 Jan 13. Review.PMID: 20079355 [PubMed - indexed for MEDLINE]

TOR-dependent control of autophagy: biting the hand that feeds.  Neufeld TP.   Curr Opin Cell Biol. 2010 Apr;22(2):157-68. Epub 2009 Dec 16.PMID: 20006481 [PubMed - in process]

The evolution of sex: a perspective from the fungal kingdom.   Lee SC, Ni M, Li W, Shertz C, Heitman J.   Microbiol Mol Biol Rev. 2010 Jun;74(2):298-340.PMID: 20508251 [PubMed - in process]

Transcriptional silencing of {gamma}-globin by BCL11A involves long-range interactions and cooperation with SOX6.  Xu J, Sankaran VG, Ni M, Menne TF, Puram RV, Kim W, Orkin SH.  Genes Dev. 2010 Apr 15;24(8):783-98.PMID: 20395365 [PubMed - indexed for MEDLINE]Free PMC Article

SHORT HYPOCOTYL UNDER BLUE1 truncations and mutations alter its association with a signaling protein complex in Arabidopsis.   Zhou Y, Ni M.  Plant Cell. 2010 Mar;22(3):703-15. Epub 2010 Mar 30.PMID: 20354198 [PubMed - in process]

Nucleosome dynamics define transcriptional enhancers.    He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS.   Nat Genet. 2010 Apr;42(4):343-7. Epub 2010 Mar 7.PMID: 20208536 [PubMed - indexed for MEDLINE]

Cell surface relocalization of the endoplasmic reticulum chaperone and unfolded protein response regulator GRP78/BiP. Zhang Y, Liu R, Ni M, Gill P, Lee AS.  J Biol Chem. 2010 May 14;285(20):15065-75. Epub 2010 Mar 5.PMID: 20208072 [PubMed - in process]

The expression of Twisted gastrulation in postnatal mouse brain and functional implications  Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A.    Neuroscience. 2010 May 18. [Epub ahead of print]PMID: 20493240 [PubMed - as supplied by publisher]

Canonical TGF-beta signaling is required for the balance of excitatory/inhibitory transmission within the hippocampus and prepulse inhibition of acoustic startle.   Sun M, Gewirtz JC, Bofenkamp L, Wickham RJ, Ge H, O'Connor MB.
J Neurosci. 2010 Apr 28;30(17):6025-35.PMID: 20427661 [PubMed - indexed for MEDLINE]

Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.  Umulis DM, Shimmi O, O'Connor MB, Othmer HG.   Dev Cell. 2010 Feb 16;18(2):260-74.PMID: 20159596 [PubMed - indexed for MEDLINE]

A multi-time-scale analysis of chemical reaction networks: I. Deterministic systems.  Lee CH, Othmer HG.  J Math Biol. 2010 Mar;60(3):387-450. Epub 2009 Apr 7.PMID: 19350241 [PubMed - indexed for MEDLINE]

O-GlcNAc protein modification in plants: Evolution and function.  Olszewski NE, West CM, Sassi SO, Hartweck LM. Biochim Biophys Acta. 2010 Feb;1800(2):49-56. Epub 2009 Dec 2. Review.PMID: 19961900 [PubMed - indexed for MEDLINE]

The expression of Twisted gastrulation in postnatal mouse brain and functional implications.  Sun M, Forsman C, Sergi C, Gopalakrishnan R, O'Connor MB, Petryk A.  Neuroscience. 2010 May 18. [Epub ahead of print]PMID: 20493240 [PubMed - as supplied by publisher]

Bone morphogenic protein 2 directly enhances differentiation of murine osteoclast precursors  Jensen ED, Pham L, Billington CJ Jr, Espe K, Carlson AE, Westendorf JJ, Petryk A, Gopalakrishnan R, Mansky K.  J Cell Biochem. 2010 Mar 1;109(4):672-82.PMID: 20039313 [PubMed - in process]

miRNAs give worms the time of their lives: small RNAs and temporal control in Caenorhabditis elegans.  Resnick TD, McCulloch KA, Rougvie AE.  Dev Dyn. 2010 May;239(5):1477-89.PMID: 20232378 [PubMed - in process]

Two-Tier Approach to the Newborn Screening of Methylenetetrahydrofolate Reductase Deficiency and Other Remethylation Disorders with Tandem Mass Spectrometry.  Tortorelli S, Turgeon CT, Lim JS, Baumgart S, Day-Salvatore DL, Abdenur J, Bernstein JA, Lorey F, Lichter-Konecki U, Oglesbee D, Raymond K, Matern D, Schimmenti L, Rinaldo P, Gavrilov DK.       J Pediatr. 2010 Apr 13. [Epub ahead of print]PMID: 20394947 [PubMed - as supplied by publisher]

Next generation sequencing in research and diagnostics of ocular birth defects.  Raca G, Jackson C, Warman B, Bair T, Schimmenti LA.  Mol Genet Metab. 2010 Jun;100(2):184-92. Epub 2010 Mar 15.PMID: 20359920 [PubMed - in process]  

TLR9 polymorphisms are associated with altered IFN-gamma levels in children with cerebral malari.  Sam-Agudu NA, Greene JA, Opoka RO, Kazura JW, Boivin MJ, Zimmerman PA, Riedesel MA, Bergemann TL, Schimmenti LA, John CC.   Am J Trop Med Hyg. 2010 Apr;82(4):548-55.PMID: 20348497 [PubMed - indexed for MEDLINE]

The role of Cdx2 in Barrett's metaplasia.  Colleypriest BJ, Farrant JM, Slack JM, Tosh D.   Biochem Soc Trans. 2010 Apr;38(2):364-9.PMID: 20298184 [PubMed - in process]

Barrett's metaplasia: molecular mechanisms and nutritional influences.  Slack JM, Colleypriest BJ, Quinlan JM, Yu WY, Farrant MJ, Tosh D.  Biochem Soc Trans. 2010 Apr;38(2):313-9.PMID: 20298175 [PubMed - in process]

Isolation and culture of embryonic pancreas and liver  Burke ZD, Li WC, Slack JM, Tosh D.  Methods Mol Biol. 2010;633:91-9.PMID: 20204622 [PubMed - indexed for MEDLINE]

Cytotoxicity Associated with Artemis Overexpression After Lentiviral Vector-Mediated Gene Transfer.  Multhaup M, Karlen AD, Swanson DL, Wilber A, Somia NV, Cowan MJ, McIvor RS.    Hum Gene Ther. 2010 Jun 1. [Epub ahead of print]PMID: 20163250 [PubMed - as supplied by publisher]

Identification of NK cell receptor ligands using a signaling reporter system.  Iizuka YM, Somia NV, Iizuka K.  Methods Mol Biol. 2010;612:285-97.PMID: 20033648 [PubMed - indexed for MEDLINE]

An unconventional myosin required for cell polarization and chemotaxis.  Breshears LM, Wessels D, Soll DR, Titus MA.    Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6918-23. Epub 2010 Mar 29.PMID: 20351273 [PubMed - indexed for MEDLINE]

Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes.  Yang SS, Xu WW, Tesfaye M, Lamb JF, Jung HJ, Vandenbosch KA, Vance CP, Gronwald JW.       BMC Genomics. 2010 May 24;11(1):323. [Epub ahead of print]PMID: 20497574 [PubMed - as supplied by publisher]Free Article

Functional Genomic Identification of Genes Required for Male Gonadal Differentiation in Caenorhabditis elegans.   Kalis AK, Kroetz MB, Larson KM, Zarkower D.     Genetics. 2010 Mar 22. [Epub ahead of print]PMID: 20308279 [PubMed - as supplied by publisher]

Cohesin is needed for bipolar mitosis in human cells.  Díaz-Martínez LA, Beauchene NA, Furniss K, Esponda P, Giménez-Abián JF, Clarke DJ.   Cell Cycle. 2010 May;9(9):1764-73. Epub 2010 May 15.PMID: 20436271 [PubMed - in process]

Determinants of Rad21 localization at the centrosome in human cells.  Giménez-Abián JF, Díaz-Martínez LA, Beauchene NA, Hsu WS, Tsai HJ, Clarke DJ. Cell Cycle. 2010 May;9(9):1759-63. Epub 2010 May 15.PMID: 20404544 [PubMed - in process]
 

Rad21 is required for centrosome integrity in human cells independently of its role in chromosome cohesion. Beauchene NA, Díaz-Martínez LA, Furniss K, Hsu WS, Tsai HJ, Chamberlain C, Esponda P, Giménez-Abián JF, Clarke DJ. Cell Cycle. 2010 May;9(9):1774-80. Epub 2010 May 15.PMID: 20404533 [PubMed - in process]

Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber.  Betancur L, Singh B, Rapp RA, Wendel JF, Marks MD, Roberts AW, Haigler CH. J Integr Plant Biol. 2010 Feb;52(2):205-20.PMID: 20377682 [PubMed - in process]

Distortion of trichome morphology by the hairless mutation of tomato affects leaf surface chemistry Kang JH, Shi F, Jones AD, Marks MD, Howe GA. J Exp Bot. 2010 Feb;61(4):1053-64. Epub 2009 Dec 16.PMID: 20018901 [PubMed - indexed for MEDLINE]

TrichOME: a comparative omics database for plant trichomes.  Dai X, Wang G, Yang DS, Tang Y, Broun P, Marks MD, Sumner LW, Dixon RA, Zhao PX.    Plant Physiol. 2010 Jan;152(1):44-54. Epub 2009 Nov 25.PMID: 19939948 [PubMed - indexed for MEDLINE]

Chromatin compaction at Hox loci: a polycomb tale beyond histone tails  Simon JA. Mol Cell. 2010 May 14;38(3):321-2.PMID: 20471938 [PubMed - in process]

Comparative analysis of chromatin binding by Sex Comb on Midleg (SCM) and other polycomb group repressors at a Drosophila Hox gene.    Wang L, Jahren N, Miller EL, Ketel CS, Mallin DR, Simon JA.  Mol Cell Biol. 2010 Jun;30(11):2584-93. Epub 2010 Mar 29.PMID: 20351181 [PubMed - indexed for MEDLINE]

Patterned assembly and neurogenesis in the chick dorsal root ganglion.  George L, Kasemeier-Kulesa J, Nelson BR, Koyano-Nakagawa N, Lefcort F. J Comp Neurol. 2010 Feb 15;518(4):405-22.PMID: 20017208 [PubMed - indexed for MEDLINE]

A microinjection technique for targeting regions of embryonic and neonatal mouse brain in vivo  Davidson S, Truong H, Nakagawa Y, Giesler GJ Jr. Brain Res. 2010 Jan 11;1307:43-52. Epub 2009 Oct 17.PMID: 19840780 [PubMed - indexed for MEDLINE]

The DM domain protein DMRT1 is a dose-sensitive regulator of fetal germ cell proliferation and pluripotency Anthony D. Krentz, Mark W. Murphy, Shinseog Kim, Matthew S. Cook, Blanche Capel, Rui Zhu, Angabin Matin, Aaron L. Sarver, Keith L. Parker, Michael D. Griswold, Leendert H. J. Looijenga, Vivian J. Bardwell, and David Zarkower Proc Natl Acad Sci U S A. 2009 December 29; 106(52): 22323–22328. Published online 2009 December 10. doi: 10.1073/pnas.0905431106. PMCID: PMC2799724

SLA2 mutations cause SWE1-mediated cell cycle phenotypes in Candida albicans andSaccharomyces cerevisiae Cheryl A. Gale, Michelle D. Leonard, Kenneth R. Finley, Leah Christensen, Mark McClellan, Darren Abbey, Cornelia Kurischko, Eric Bensen, Iris Tzafrir, Sarah Kauffman, Jeff Becker, and Judith Berman Microbiology. Author manuscript; available in PMC 2010 December 1. PMCID: PMC2846636 Published in final edited form as: Microbiology. 2009 December; 155(Pt 12): 3847–3859. Published online 2009 September 24. doi: 10.1099/mic.0.033233-0. Manuscript: | Free in PMC on 2010/12/01 

Evolution of pathogenicity and sexual reproduction in eight Candida genomesGeraldine Butler, Matthew D. Rasmussen, Michael F. Lin, Manuel A.S. Santos, Sharadha Sakthikumar, Carol A. Munro, Esther Rheinbay, Manfred Grabherr, Anja Forche, Jennifer L. Reedy, Ino Agrafioti, Martha B. Arnaud, Steven Bates, Alistair J.P. Brown, Sascha Brunke, Maria C. Costanzo, David A. Fitzpatrick, Piet W. J. de Groot, David Harris, Lois L. Hoyer, Bernhard Hube, Frans M. Klis, Chinnappa Kodira, Nicola Lennard, Mary E. Logue, Ronny Martin, Aaron M. Neiman, Elissavet Nikolaou, Michael A. Quail, Janet Quinn, Maria C. Santos, Florian F. Schmitzberger, Gavin Sherlock, Prachi Shah, Kevin Silverstein, Marek S. Skrzypek, David Soll, Rodney Staggs, Ian Stansfield, Michael P H Stumpf, Peter E. Sudbery, Srikantha Thyagarajan, Qiandong Zeng, Judith Berman, Matthew Berriman, Joseph Heitman, Neil A. R. Gow, Michael C. Lorenz, Bruce W. Birren, Manolis Kellis, and Christina A. Cuomo Nature. Author manuscript; available in PMC 2010 March 8. PMCID: PMC2834264 Published in final edited form as: Nature. 2009 June 4; 459(7247): 657–662. doi: 10.1038/nature08064.

Dancing genomes: fungal nuclear positioning 
Amy Gladfelter and Judith Berman Nat Rev Microbiol. Author manuscript; available in PMC 2010 June 1. PMCID: PMC2794368 Published in final edited form as: Nat Rev Microbiol. 2009 December; 7(12): 875–886. Published online 2009 November 9. doi: 10.1038/nrmicro2249. Manuscript: | Free in PMC on 2010/06/01 | 

Growth and development: eukaryotes Judith Berman Curr Opin Microbiol. Author manuscript; available in PMC 2010 December 1. PMCID: PMC2792713 Published in final edited form as: Curr Opin Microbiol. 2009 December; 12(6): 589–591. Published online 2009 November 2. doi: 10.1016/j.mib.2009.10.001. Manuscript: | Free in PMC on 2010/12/01

Increase in NF-κB Binding Affinity of the Variant C Allele of the Toll-Like Receptor 9 −1237T/C Polymorphism Is Associated with Helicobacter pylori-Induced Gastric Disease Mike Tsz Hin Ng, Rob van't Hof, Julie C. Crockett, Mairi E. Hope, Susan Berry, John Thomson, Mairi H. McLean, Kenneth E. L. McColl, Emad M. El-Omar, and Georgina L. Hold Infect Immun. 2010 March; 78(3): 1345–1352. Published online 2009 December 28. doi: 10.1128/IAI.01226-09. PMCID: PMC2825916

CD14-159C/T and TLR9-1237T/C polymorphisms are not associated with gastric cancer risk in Caucasian populations Georgina L. Hold, Charles S. Rabkin, Marilie D. Gammon, Susan H. Berry, Malcolm G. Smith, Jolanta Lissowska, Harvey A. Risch, Wong-Ho Chow, N. Ashley G. Mowat, Thomas L. Vaughan, and Emad M. El-Omar Eur J Cancer Prev. Author manuscript; available in PMC 2010 April 1. PMCID: PMC2679029 Published in final edited form as: Eur J Cancer Prev. 2009 April; 18(2): 117–119. doi: 10.1097/CEJ.0b013e3283101292

Gene Expression in Lung and Liver After Intravenous Infusion of Polyethylenimine Complexes of Sleeping Beauty Transposons Kelly M. Podetz-Pedersen, Jason B. Bell, Terry W.J. Steele, Andrew Wilber, W. Thomas Shier, Lalitha R. Belur, R. Scott McIvor, and Perry B. Hackett Hum Gene Ther. 2010 February; 21(2): 210–220. Published online 2009 December 30. doi: 10.1089/hum.2009.128. PMCID: PMC2829452

Acquisition of Aneuploidy Provides Increased Fitness during the Evolution of Antifungal Drug Resistance Anna M. Selmecki, Keely Dulmage, Leah E. Cowen, James B. Anderson, and Judith Berman PLoS Genet. 2009 October; 5(10): e1000705. Published online 2009 October 30. doi: 10.1371/journal.pgen.1000705. PMCID: PMC2760147
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Aneuploid Chromosomes Are Highly Unstable during DNA Transformation of Candida albicans Kelly Bouchonville, Anja Forche, Karen E. S. Tang, Anna Selmecki, and Judith Berman Eukaryot Cell. 2009 October; 8(10): 1554–1566. Published online 2009 August 21. doi: 10.1128/EC.00209-09. PMCID: PMC2756872

Evolution in Candida albicans Populations During a Single Passage Through a Mouse Host Anja Forche, P. T. Magee, Anna Selmecki, Judith Berman, and Georgiana May Genetics. 2009 July; 182(3): 799–811. doi: 10.1534/genetics.109.103325. PMCID: PMC2710160

Efficient and Rapid identification of Candida albicans allelic status using SNP-RFLPAnja Forche, Musetta Steinbach, and Judith Berman FEMS Yeast Res. Author manuscript; available in PMC 2010 October 1. PMCID: PMC2763041 Published in final edited form as: FEMS Yeast Res. 2009 October; 9(7): 1061–1069. Published online 2009 June 22. doi: 10.1111/j.1567-1364.2009.00542.x. Manuscript: | Free in PMC on 2010/10/01 | 

Neocentromeres Form Efficiently at Multiple Possible Loci in Candida albicans Carrie Ketel, Helen S. W. Wang, Mark McClellan, Kelly Bouchonville, Anna Selmecki, Tamar Lahav, Maryam Gerami-Nejad, and Judith Berman PLoS Genet. 2009 March; 5(3): e1000400. Published online 2009 March 6. doi: 10.1371/journal.pgen.1000400. PMCID: PMC2642679

Calcineurin Activates Cytoglobin Transcription in Hypoxic Myocytes Sarvjeet Singh, Shilpa M. Manda, Devanjan Sikder, Michael J. Birrer, Beverly A. Rothermel, Daniel J. Garry, and Pradeep P. A. Mammen J Biol Chem. 2009 April 17; 284(16): 10409–10421. doi: 10.1074/jbc.M809572200. PMCID: PMC2667728

Nkx2–5 transactivates the Ets-related protein 71 gene and specifies an endothelial/endocardial fate in the developing embryo Anwarul Ferdous, Arianna Caprioli, Michelina Iacovino, Cindy M. Martin, Jesse Morris, James A. Richardson, Shuaib Latif, Robert E. Hammer, Richard P. Harvey, Eric N. Olson, Michael Kyba, and Daniel J. Garry Proc Natl Acad Sci U S A. 2009 January 20; 106(3): 814–819. Published online 2009 January 7. doi: 10.1073/pnas.0807583106. PMCID: PMC2630085

Hypoxia reprograms calcium signaling and regulates myoglobin expression Shane B. Kanatous, Pradeep P. A. Mammen, Paul B. Rosenberg, Cindy M. Martin, Michael D. White, J. Michael DiMaio, Guojin Huang, Shmuel Muallem, and Daniel J. Garry Am J Physiol Cell Physiol. 2009 March; 296(3): C393–C402. Published online 2008 November 12. doi: 10.1152/ajpcell.00428.2008. PMCID: PMC2660263

Neuropilin receptors guide distinct phases of sensory and motor neuronal segmentation Julaine Roffers-Agarwal and Laura S. Gammill Development. 2009 June 1; 136(11): 1879–1888. Published online 2009 April 29. doi: 10.1242/dev.032920. PMCID: PMC2730397

Incidence of Moderate to Severe Cognitive Dysfunction in Patients Having Carotid Artery Stenting John G. Gaudet, Philip M. Meyers, James F. McKinsey, Sean D. Lavine, William Gray, Elizabeth Mitchell, E. Sander Connolly, Jr., and Eric J. Heyer Neurosurgery. Author manuscript; available in PMC 2009 November 1. PMCID: PMC2716040 Published in final edited form as: Neurosurgery. 2009 August; 65(2): 325–330. doi: 10.1227/01.NEU.0000349920.69637.78.

Arabidopsis IAR4 Modulates Auxin Response by Regulating Auxin Homeostasis Marcel Quint, Lana S. Barkawi, Kai-Ting Fan, Jerry D. Cohen, and William M. Gray Plant Physiol. 2009 June; 150(2): 748–758. doi: 10.1104/pp.109.136671. PMCID: PMC2689969

Intravascular Ultrasound of Symptomatic Intracranial Stenosis Demonstrates Atherosclerotic Plaque with Intraplaque Hemorrhage: A Case Report Philip M. Meyers, H. Christian Schumacher, William A. Gray, Johanna Fifi, John G. Gaudet, Eric J. Heyer, and Ji Y. Chong J Neuroimaging. Author manuscript; available in PMC 2009 July 15. PMCID: PMC2710422 Published in final edited form as: J Neuroimaging. 2009 July; 19(3): 266–270. Published online 2008 October 24. doi: 10.1111/j.1552-6569.2008.00278.x.

MSP and GLP-1/Notch signaling coordinately regulate actomyosin-dependent cytoplasmic streaming and oocyte growth in C. elegans Saravanapriah Nadarajan, J. Amaranath Govindan, Marie McGovern, E. Jane Albert Hubbard, and David Greenstein Development. 2009 July 1; 136(13): 2223–2234. Published online 2009 June 5. doi: 10.1242/dev.034603. PMCID: PMC2729341

Somatic cAMP signaling regulates MSP-dependent oocyte growth and meiotic maturation in C. elegans J. Amaranath Govindan, Saravanapriah Nadarajan, Seongseop Kim, Todd A. Starich, and David Greenstein Development. 2009 July 1; 136(13): 2211–2221. Published online 2009 June 5. doi: 10.1242/dev.034595. PMCID: PMC2729340

Systemic Correction of Storage Disease in MPS I NOD/SCID Mice Using the Sleeping Beauty Transposon System Elena L Aronovich, Jason B Bell, Shaukat A Khan, Lalitha R Belur, Roland Gunther, Brenda Koniar, Patricia A Schachern, Josh B Parker, Cathy S Carlson, Chester B Whitley, R Scott McIvor, Pankaj Gupta, and Perry B Hackett Mol Ther. 2009 July; 17(7): 1136–1144. Published online 2009 April 21. doi: 10.1038/mt.2009.87. PMCID: PMC2835207

No effect of cancer-associated SNP rs6983267 in the 8q24 region on co-expression ofMYC and TCF7L2 in normal colon tissue Ludmila Prokunina-Olsson and Jennifer L Hall Mol Cancer. 2009; 8: 96. Published online 2009 November 6. doi: 10.1186/1476-4598-8-96. PMCID: PMC2777153

Tissue-specific alternative splicing of TCF7L2 Ludmila Prokunina-Olsson, Cullan Welch, Ola Hansson, Neeta Adhikari, Laura J. Scott, Nicolle Usher, Maurine Tong, Andrew Sprau, Amy Swift, Lori L. Bonnycastle, Michael R. Erdos, Zhi He, Richa Saxena, Brennan Harmon, Olga Kotova, Eric P. Hoffman, David Altshuler, Leif Groop, Michael Boehnke, Francis S. Collins, and Jennifer L. Hall Hum Mol Genet. 2009 October 15; 18(20): 3795–3804. Published online 2009 July 14. doi: 10.1093/hmg/ddp321. PMCID: PMC2748888

Drug management for hypertension in type 2 diabetes in family practice Wayne Putnam, Farokh Buhariwalla, Kendrick Lacey, Mary Goodfellow, Rose Anne Goodine, Jennifer Hall, Ian MacDonald, Michael Murray, Preston Smith, Fred Burge, Nandini Natarajan, and Beverley Lawson Can Fam Physician. 2009 July; 55(7): 728–734. PMCID: PMC2718608

Biodesign of a renal-protective peptide based on alternative splicing of B-type natriuretic peptide Shuchong Pan, Horng H. Chen, Deborah M. Dickey, Guido Boerrigter, Candace Lee, Laurel S. Kleppe, Jennifer L. Hall, Amir Lerman, Margaret M. Redfield, Lincoln R. Potter, John C. Burnett, Jr, and Robert D. Simari Proc Natl Acad Sci U S A. 2009 July 7; 106(27): 11282–11287. Published online 2009 June 18. doi: 10.1073/pnas.0811851106. PMCID: PMC2708694

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn’s disease Steven A McCarroll, Alan Huett, Petric Kuballa, Shannon D Chilewski, Aimee Landry, Philippe Goyette, Michael C Zody, Jennifer L Hall, Steven R Brant, Judy H Cho, Richard H Duerr, Mark S Silverberg, Kent D Taylor, John D Rioux, David Altshuler, Mark J Daly, and Ramnik J Xavier Nat Genet. Author manuscript; available in PMC 2009 August 25. PMCID: PMC2731799 Published in final edited form as: Nat Genet. 2008 September; 40(9): 1107–1112. doi: 10.1038/ng.215.

Method for Analysis of Nanoparticle Hemolytic Properties In Vitro Marina A. Dobrovolskaia, Jeffrey D. Clogston, Barry W. Neun, Jennifer B. Hall, Anil K. Patri, and Scott E. McNeil Nano Lett. Author manuscript; available in PMC 2009 August 1. PMCID: PMC2613576 Published in final edited form as: Nano Lett. 2008 August; 8(8): 2180–2187. Published online 2008 July 8. doi: 10.1021/nl0805615.

asunder Is a Critical Regulator of Dynein–Dynactin Localization during DrosophilaSpermatogenesis Michael A. Anderson, Jeanne N. Jodoin, Ethan Lee, Karen G. Hales, Thomas S. Hays, and Laura A. Lee Mol Biol Cell. 2009 June 1; 20(11): 2709–2721. doi: 10.1091/mbc.E08-12-1165. PMCID: PMC2688550

Management of atherothrombotic risk factors in high-risk Canadian outpatients Alan Bell, Michael D Hill, Robert J Herman, Manon Girard, and Eric Cohen Can J Cardiol. 2009 June; 25(6): 345–354. PMCID: PMC2722477

The 2009 Canadian Hypertension Education Program recommendations for the management of hypertension: Part 2 – therapy Nadia A Khan, Brenda Hemmelgarn, Robert J Herman, Chaim M Bell, Jeff L Mahon, Lawrence A Leiter, Simon W Rabkin, Michael D Hill, Raj Padwal, Rhian M Touyz, Pierre Larochelle, Ross D Feldman, Ernesto L Schiffrin, Norman RC Campbell, Gordon Moe, Ramesh Prasad, Malcolm O Arnold, Tavis S Campbell, Alain Milot, James A Stone, Charlotte Jones, Richard I Ogilvie, Pavel Hamet, George Fodor, George Carruthers, Kevin D Burns, Marcel Ruzicka, Jacques deChamplain, George Pylypchuk, Robert Petrella, Jean-Martin Boulanger, Luc Trudeau, Robert A Hegele, Vincent Woo, Phil McFarlane, Michel Vallée, Jonathan Howlett, Simon L Bacon, Patrice Lindsay, Richard E Gilbert, Richard Z Lewanczuk, and Sheldon Tobe Can J Cardiol. 2009 May; 25(5): 287–298. PMCID: PMC270716

A gap junction connexin is required in the vertebrate left-right organizer Hatler JM, Essner JJ, Johnson RG. Dev Biol. 2009 Dec 15;336(2):183-91. Epub 2009 Sep 30.PMID: 19799895 [PubMed - indexed for MEDLINE] 

Autophagy and the functional roles of Atg5 and beclin-1 in the anti-tumor effects of 3beta androstene 17alpha diol neuro-steroid on malignant glioma cells  Graf MR, Jia W, Johnson RS, Dent P, Mitchell C, Loria RM. J Steroid Biochem Mol Biol. 2009 Jul;115(3-5):137-45. Epub 2009 Apr 16.PMID: 19375507 [PubMed - indexed for MEDLINE]

Bilirubin as a determinant for altered neurogenesis, neuritogenesis, and synaptogenesis.  Fernandes A, Falcão AS, Abranches E, Bekman E, Henrique D, Lanier LM, Brites D.  Dev Neurobiol. 2009 Aug;69(9):568-82.PMID: 19449315 [PubMed - indexed for MEDLINE]

Automated analysis of NeuronJ tracing data. Popko J, Fernandes A, Brites D, Lanier LM. Cytometry A. 2009 Apr;75(4):371-6.PMID: 18937344 [PubMed - indexed for MEDLINE] 

Whole-body sleeping beauty mutagenesis can cause penetrant leukemia/lymphoma and rare high-grade glioma without associated embryonic lethality.  Collier LS, Adams DJ, Hackett CS, Bendzick LE, Akagi K, Davies MN, Diers MD, Rodriguez FJ, Bender AM, Tieu C, Matise I, Dupuy AJ, Copeland NG, Jenkins NA, Hodgson JG, Weiss WA, Jenkins RB, Largaespada DA.  Cancer Res. 2009 Nov 1;69(21):8429-37. Epub 2009 Oct 20.PMID: 19843846 [PubMed - indexed for MEDLINE]

A modified sleeping beauty transposon system that can be used to model a wide variety of human cancers in mice.  Dupuy AJ, Rogers LM, Kim J, Nannapaneni K, Starr TK, Liu P, Largaespada DA, Scheetz TE, Jenkins NA, Copeland NG. Cancer Res. 2009 Oct 15;69(20):8150-6. Epub 2009 Oct 6.PMID: 19808965 [PubMed - indexed for MEDLINE]

Efficient transposition of Tol2 in the mouse germline.  Keng VW, Ryan BJ, Wangensteen KJ, Balciunas D, Schmedt C, Ekker SC, Largaespada DA.  Genetics. 2009 Dec;183(4):1565-73. Epub 2009 Oct 5.PMID: 19805821 [PubMed - indexed for MEDLINE] 

Developmental origins of cancer.  Johnson KJ, Springer NM, Bielinsky AK, Largaespada DA, Ross JA.  Cancer Res. 2009 Aug 15;69(16):6375-7. Epub 2009 Aug 4. No abstract available. PMID: 19654290 [PubMed - indexed for MEDLINE] 

Transposon-mediated mutagenesis of somatic cells in the mouse for cancer gene identification  Largaespada DA. Methods. 2009 Nov;49(3):282-6. Epub 2009 Jul 14.PMID: 19607923 [PubMed - indexed for MEDLINE] 

Identification of PDE4D as a proliferation promoting factor in prostate cancer using a Sleeping Beauty transposon-based somatic mutagenesis screen.  Rahrmann EP, Collier LS, Knutson TP, Doyal ME, Kuslak SL, Green LE, Malinowski RL, Roethe L, Akagi K, Waknitz M, Huang W, Largaespada DA, Marker PC.  Cancer Res. 2009 May 15;69(10):4388-97. Epub 2009 Apr 28.PMID: 19401450 [PubMed - indexed for MEDLINE] 

Transposon mutagenesis in mice  Largaespada DA.  Methods Mol Biol. 2009;530:379-90.PMID: 19266336 [PubMed - indexed for MEDLINE]

A transposon-based genetic screen in mice identifies genes altered in colorectal cancer  Starr TK, Allaei R, Silverstein KA, Staggs RA, Sarver AL, Bergemann TL, Gupta M, O'Sullivan MG, Matise I, Dupuy AJ, Collier LS, Powers S, Oberg AL, Asmann YW, Thibodeau SN, Tessarollo L, Copeland NG, Jenkins NA, Cormier RT, Largaespada DA.  Science. 2009 Mar 27;323(5922):1747-50. Epub 2009 Feb 26.PMID: 19251594 [PubMed - indexed for MEDLINE]

A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma. Keng VW, Villanueva A, Chiang DY, Dupuy AJ, Ryan BJ, Matise I, Silverstein KA, Sarver A, Starr TK, Akagi K, Tessarollo L, Collier LS, Powers S, Lowe SW, Jenkins NA, Copeland NG, Llovet JM, Largaespada DA.  Nat Biotechnol. 2009 Mar;27(3):264-74. Epub 2009 Feb 22.PMID: 19234449 [PubMed - indexed for MEDLINE] 

De novo induction of genetically engineered brain tumors in mice using plasmid DNA. Wiesner SM, Decker SA, Larson JD, Ericson K, Forster C, Gallardo JL, Long C, Demorest ZL, Zamora EA, Low WC, SantaCruz K, Largaespada DA, Ohlfest JR. Cancer Res. 2009 Jan 15;69(2):431-9.PMID: 19147555 [PubMed - indexed for MEDLINE] 

RAS oncogene suppression induces apoptosis followed by more differentiated and less myelosuppressive disease upon relapse of acute myeloid leukemia. Kim WI, Matise I, Diers MD, Largaespada DA. Blood. 2009 Jan 29;113(5):1086-96. Epub 2008 Oct 24.PMID: 18952898 [PubMed - indexed for MEDLINE] 

A retroviral mutagenesis screen reveals strong cooperation between Bcl11a overexpression and loss of the Nf1 tumor suppressor geneYin B, Delwel R, Valk PJ, Wallace MR, Loh ML, Shannon KM, Largaespada DA. Blood. 2009 Jan 29;113(5):1075-85. Epub 2008 Oct 23.PMID: 18948576 [PubMed - indexed for MEDLINE] 

A facile method for somatic, lifelong manipulation of multiple genes in the mouse liver. Wangensteen KJ, Wilber A, Keng VW, He Z, Matise I, Wangensteen L, Carson CM, Chen Y, Steer CJ, McIvor RS, Largaespada DA, Wang X, Ekker SC. Hepatology. 2008 May;47(5):1714-24.PMID: 18435462 [PubMed - indexed for MEDLINE]

Actin in axons: stable scaffolds and dynamic filaments Letourneau PC.  Results Probl Cell Differ. 2009;48:65-90. Review.PMID: 19582412 [PubMed - indexed for MEDLINE]

Protein synthesis in distal axons is not required for growth cone responses to guidance cues  Roche FK, Marsick BM, Letourneau PC. J Neurosci. 2009 Jan 21;29(3):638-52.PMID: 19158291 [PubMed - indexed for MEDLINE]     

rhBMP-2 modulation of gene expression in infected segmental bone defects Brick KE, Chen X, Lohr J, Schmidt AH, Kidder LS, Lew WD.  Clin Orthop Relat Res. 2009 Dec;467(12):3096-103. Epub 2008 Nov 19.PMID: 19018606 [PubMed - indexed for MEDLINE]

Progenitor cell maturation in the developing vertebrate retina. Yang HJ, Silva AO, Koyano-Nakagawa N, McLoon SC. Dev Dyn. 2009 Nov;238(11):2823-36.PMID: 19842182 [PubMed - indexed for MEDLINE]

Feedback regulation of NEUROG2 activity by MTGR1 is required for progression of neurogenesis.  Aaker JD, Patineau AL, Yang HJ, Ewart DT, Gong W, Li T, Nakagawa Y, McLoon SC, Koyano-Nakagawa N.  Mol Cell Neurosci. 2009 Dec;42(4):267-77. Epub 2009 Jul 28.PMID: 19646530 [PubMed - indexed for MEDLINE] 

Drosophila glypicans regulate the germline stem cell niche  Hayashi Y, Kobayashi S, Nakato H.  J Cell Biol. 2009 Nov 16;187(4):473-80. Epub 2009 Nov 9.PMID: 19948496 [PubMed - indexed for MEDLINE]

A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway Arsham AM, Neufeld TP. PLoS One. 2009 Jun 29;4(6):e6068.PMID: 19562034 [PubMed - indexed for MEDLINE] 

 An Atg1/Atg13 complex with multiple roles in TOR-mediated autophagy regulation. Chang YY, Neufeld TP. Mol Biol Cell. 2009 Apr;20(7):2004-14. Epub 2009 Feb 18.PMID: 19225150 [PubMed - indexed for MEDLINE]

Abeta42-induced neurodegeneration via an age-dependent autophagic-lysosomal injury in Drosophila Ling D, Song HJ, Garza D, Neufeld TP, Salvaterra PM. PLoS One. 2009;4(1):e4201. Epub 2009 Jan 15.PMID: 19145255 [PubMed - indexed for MEDLINE] 

Nutrient-dependent regulation of autophagy through the target of rapamycin pathway Chang YY, Juhász G, Goraksha-Hicks P, Arsham AM, Mallin DR, Muller LK, Neufeld TP.   Biochem Soc Trans. 2009 Feb;37(Pt 1):232-6. Review.PMID: 19143638 [PubMed - indexed for MEDLINE]

Control of cyclin D1 and breast tumorigenesis by the EglN2 prolyl hydroxylase  Zhang Q, Gu J, Li L, Liu J, Luo B, Cheung HW, Boehm JS, Ni M, Geisen C, Root DE, Polyak K, Brown M, Richardson AL, Hahn WC, Kaelin WG Jr, Bommi-Reddy A.  Cancer Cell. 2009 Nov 6;16(5):413-24.PMID: 19878873 [PubMed - indexed for MEDLINE] 

Regulation of PERK signaling and leukemic cell survival by a novel cytosolic isoform of the UPR regulator GRP78/BiP.  Ni M, Zhou H, Wey S, Baumeister P, Lee AS.  PLoS One. 2009 Aug 31;4(8):e6868.PMID: 19718440 [PubMed - indexed for MEDLINE]

SHB1 plays dual roles in photoperiodic and autonomous flowering. Zhou Y, Ni M. Dev Biol. 2009 Jul 1;331(1):50-7. Epub 2009 May 3.PMID: 19406114 [PubMed - indexed for MEDLINE]

SHORT HYPOCOTYL UNDER BLUE1 associates with MINISEED3 and HAIKU2 promoters in vivo to regulate Arabidopsis seed development.  Zhou Y, Zhang X, Kang X, Zhao X, Zhang X, Ni M.  Plant Cell. 2009 Jan;21(1):106-17. Epub 2009 Jan 13.PMID: 19141706 [PubMed - indexed for MEDLINE] 

A fat body-derived IGF-like peptide regulates postfeeding growth in DrosophilaOkamoto N, Yamanaka N, Yagi Y, Nishida Y, Kataoka H, O'Connor MB, Mizoguchi A. Dev Cell. 2009 Dec;17(6):885-91.PMID: 20059957 [PubMed - indexed for MEDLINE] 

The insect neuropeptide PTTH activates receptor tyrosine kinase torso to initiate metamorphosis Rewitz KF, Yamanaka N, Gilbert LI, O'Connor MB.  Science. 2009 Dec 4;326(5958):1403-5.PMID: 19965758 [PubMed - indexed for MEDLINE]

The extracellular regulation of bone morphogenetic protein signaling. Umulis D, O'Connor MB, Blair SS. Development. 2009 Nov;136(22):3715-28. Review.PMID: 19855014 [PubMed - indexed for MEDLINE]

The Drosophila Activin-like ligand Dawdle signals preferentially through one isoform of the Type-I receptor Baboon Jensen PA, Zheng X, Lee T, O'Connor MB.  Mech Dev. 2009 Dec;126(11-12):950-7. Epub 2009 Sep 18.PMID: 19766717 [PubMed - indexed for MEDLINE] 

Studies on the Black Box: incorporation of 3-oxo-7-dehydrocholesterol into ecdysteroids by Drosophila melanogaster and Manduca sexta Warren JT, O'Connor MB, Gilbert LI.  Insect Biochem Mol Biol. 2009 Oct;39(10):677-87. Epub 2009 Aug 20.PMID: 19699302 [PubMed - indexed for MEDLINE] 

A phosphoproteomics approach to elucidate neuropeptide signal transduction controlling insect metamorphosis Rewitz KF, Larsen MR, Lobner-Olesen A, Rybczynski R, O'Connor MB, Gilbert LI. Insect Biochem Mol Biol. 2009 Jul;39(7):475-83. Epub 2009 May 5.PMID: 19422916 [PubMed - indexed for MEDLINE]

Iron is essential for neuron development and memory function in mouse hippocampusCarlson ES, Tkac I, Magid R, O'Connor MB, Andrews NC, Schallert T, Gunshin H, Georgieff MK, Petryk A. J Nutr. 2009 Apr;139(4):672-9. Epub 2009 Feb 11.PMID: 19211831 [PubMed - indexed for MEDLINE]

Nemo kinase interacts with Mad to coordinate synaptic growth at the Drosophila neuromuscular junction Merino C, Penney J, González M, Tsurudome K, Moujahidine M, O'Connor MB, Verheyen EM, Haghighi P. J Cell Biol. 2009 May 18;185(4):713-25.PMID: 19451277 [PubMed - indexed for MEDLINE]

The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology Othmer HG, Painter K, Umulis D, Xue C.  Math Model Nat Phenom. 2009 Jan 1;4(4):3-82.PMID: 19844610 [PubMed] 

Spatiotemporal characteristics of calcium dynamics in astrocytes. Kang M, Othmer HG.  Chaos. 2009 Sep;19(3):037116.PMID: 19792041 [PubMed - indexed for MEDLINE]

Multiscale models of taxis-driven patterning in bacterial populations Xue C, Othmer HG.  SIAM J Appl Math. 2009;70(1):133-169.PMID: 19784399 [PubMed] 

Multi-scale models of cell and tissue dynamics Stolarska MA, Kim Y, Othmer HG.  Philos Transact A Math Phys Eng Sci. 2009 Sep 13;367(1902):3525-53.PMID: 19657010 [PubMed - indexed for MEDLINE] 

Cytosolic activity of SPINDLY implies the existence of a DELLA-independent gibberellin-response pathway Maymon I, Greenboim-Wainberg Y, Sagiv S, Kieber JJ, Moshelion M, Olszewski N, Weiss D.  Plant J. 2009 Jun;58(6):979-88. Epub 2009 Feb 18. Erratum in: Plant J. 2009 Dec;60(5):929. PMID: 19228341 [PubMed - indexed for MEDLINE]

O-glycosylation of protein subpopulations in alcohol-extracted rice proteins. Kilcoyne M, Shah M, Gerlach JQ, Bhavanandan V, Nagaraj V, Smith AD, Fujiyama K, Sommer U, Costello CE, Olszewski N, Joshi L.  J Plant Physiol. 2009 Feb 15;166(3):219-32. Epub 2008 Jul 18.PMID: 18639953 [PubMed - indexed for MEDLINE] 

The use of hormonal therapy in pediatric heart disease.  Nathan BM, Sockalosky J, Nelson L, Lai S, Sergi C, Petryk A. Front Biosci (Schol Ed). 2009 Jun 1;1:358-75.PMID: 19482707 [PubMed - in process] 

Enhanced osteoclastogenesis causes osteopenia in twisted gastrulation-deficient mice through increased BMP signaling. Sotillo Rodriguez JE, Mansky KC, Jensen ED, Carlson AE, Schwarz T, Pham L, MacKenzie B, Prasad H, Rohrer MD, Petryk A, Gopalakrishnan R.  J Bone Miner Res. 2009 Nov;24(11):1917-26.PMID: 19419314 [PubMed - indexed for MEDLINE] 

Twisted gastrulation limits apoptosis in the distal region of the mandibular arch in miceMacKenzie B, Wolff R, Lowe N, Billington CJ Jr, Peterson A, Schmidt B, Graf D, Mina M, Gopalakrishnan R, Petryk A.  Dev Biol. 2009 Apr 1;328(1):13-23. Epub 2009 Jan 20.PMID: 19389368 [PubMed - indexed for MEDLINE] 

First phase insulin release and glucose tolerance in children with Fanconi anemia after hematopoietic cell transplantation Polgreen LE, Thomas W, MacMillan ML, Wagner JE, Moran A, Petryk A.  Pediatr Blood Cancer. 2009 Aug;53(2):191-6.PMID: 19353625 [PubMed - indexed for MEDLINE] 

Auxological evaluation and determinants of growth failure at the time of adoption in Eastern European adoptees. Miller BS, Kroupina MG, Iverson SL, Masons P, Narad C, Himes JH, Johnson DE, Petryk A. J Pediatr Endocrinol Metab. 2009 Jan;22(1):31-9.PMID: 19344072 [PubMed - indexed for MEDLINE]

miRNA regulation through ligand occupancy of a nuclear hormone receptor. Rougvie AE.  Sci Signal. 2009 Aug 18;2(84):pe52.PMID: 19690329 [PubMed - indexed for MEDLINE]

Detection of cytomegalovirus DNA in dried blood spots of Minnesota infants who do not pass newborn hearing screening  Choi KY, Schimmenti LA, Jurek AM, Sharon B, Daly K, Khan C, McCann M, Schleiss MR. Pediatr Infect Dis J. 2009 Dec;28(12):1095-8.PMID: 19820425 [PubMed - indexed for MEDLINE]

Parents' perceptions of autism spectrum disorder etiology and recurrence risk and effects of their perceptions on family planning: Recommendations for genetic counselors. Selkirk CG, McCarthy Veach P, Lian F, Schimmenti L, LeRoy BS. J Genet Couns. 2009 Oct;18(5):507-19. Epub 2009 Jun 2.PMID: 19488842 [PubMed - indexed for MEDLINE]

A prospective, longitudinal study of the impact of GJB2/GJB6 genetic testing on the beliefs and attitudes of parents of deaf and hard-of-hearing infants.  Palmer CG, Martinez A, Fox M, Zhou J, Shapiro N, Sininger Y, Grody WW, Schimmenti LA.  Am J Med Genet A. 2009 Jun;149A(6):1169-82.PMID: 19449415 [PubMed - indexed for MEDLINE] 

A primer for morpholino use in zebrafish. Bill BR, Petzold AM, Clark KJ, Schimmenti LA, Ekker SC.  Zebrafish. 2009 Mar;6(1):69-77. Review.PMID: 19374550 [PubMed - indexed for MEDLINE] 

Interactions between innexins UNC-7 and UNC-9 mediate electrical synapse specificity in the Caenorhabditis elegans locomotory nervous system.  Starich TA, Xu J, Skerrett IM, Nicholson BJ, Shaw JE. Neural Dev. 2009 May 11;4:16.PMID: 19432959 [PubMed - indexed for MEDLINE]

Biphasic myopathic phenotype of mouse DUX, an ORF within conserved FSHD-related repeats.   Bosnakovski D, Daughters RS, Xu Z, Slack JM, Kyba M.  PLoS One. 2009 Sep 16;4(9):e7003.PMID: 19756142 [PubMed - indexed for MEDLINE]

Reprogramming of liver to pancreas.  Thowfeequ S, Li WC, Slack JM, Tosh D.  Methods Mol Biol. 2009;482:407-18.PMID: 19089370 [PubMed - indexed for MEDLINE]

Retrovirus vectors.  Lech P, Somia NV.  Contrib Nephrol. 2008;159:30-46. Review.PMID: 18391583 [PubMed - indexed for MEDLINE]  

Motors: unleashing mitochondria.  Titus MA.  Curr Biol. 2009 Dec 15;19(23):R1076-8.PMID: 20064407 [PubMed - indexed for MEDLINE]

Structural dynamics of the myosin relay helix by time-resolved EPR and FRET. Agafonov RV, Negrashov IV, Tkachev YV, Blakely SE, Titus MA, Thomas DD, Nesmelov YE.Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21625-30. Epub 2009 Dec 4.PMID: 19966224 [PubMed - indexed for MEDLINE]

The Dictyostelium type V myosin MyoJ is responsible for the cortical association and motility of contractile vacuole membranes.  Jung G, Titus MA, Hammer JA 3rd.   J Cell Biol. 2009 Aug 24;186(4):555-70. Epub 2009 Aug 17.PMID: 19687255 [PubMed - indexed for MEDLINE] 

Legume focus: model species sequenced, mutagenesis approaches extended, and debut of a new model. O'Brian MR, Vance CP, Vandenbosch KA.  Plant Physiol. 2009 Nov;151(3):969. No abstract available. PMID: 19887668 [PubMed - indexed for MEDLINE]

Knockdown of CELL DIVISION CYCLE16 reveals an inverse relationship between lateral root and nodule numbers and a link to auxin in Medicago truncatula Kuppusamy KT, Ivashuta S, Bucciarelli B, Vance CP, Gantt JS, Vandenbosch KA.  Plant Physiol. 2009 Nov;151(3):1155-66. Epub 2009 Sep 29.PMID: 19789288 [PubMed - indexed for MEDLINE] 

The DM domain protein DMRT1 is a dose-sensitive regulator of fetal germ cell proliferation and pluripotency  Krentz AD, Murphy MW, Kim S, Cook MS, Capel B, Zhu R, Matin A, Sarver AL, Parker KL, Griswold MD, Looijenga LH, Bardwell VJ, Zarkower D.  Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22323-8. Epub 2009 Dec 10.PMID: 20007774 [PubMed - indexed for MEDLINE] 

Assaying topoisomerase II checkpoints in yeast  Furniss K, Vas AC, Lane A, Clarke DJ.  Methods Mol Biol. 2009;582:167-87.PMID: 19763950 [PubMed - indexed for MEDLINE]

Introduction: emerging themes in DNA topoisomerase research Clarke DJ, Lane A.  Methods Mol Biol. 2009;582:1-9.PMID: 19763937 [PubMed - indexed for MEDLINE]

 Decatenation: fixing your knots  Clarke DJ.  Blood. 2009 Aug 27;114(9):1721-2.PMID: 19713475 [PubMed]
 

Strong inducible knockdown of Cdc20 does not cause mitotic arrest in human somatic cells: implications for cancer therapy? Clarke DJ.  Cell Cycle. 2009 Feb 15;8(4):515-6. Epub 2009 Feb 15. No abstract available. PMID: 19221471 [PubMed - indexed for MEDLINE]

A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Pang Y, Wenger JP, Saathoff K, Peel GJ, Wen J, Huhman D, Allen SN, Tang Y, Cheng X, Tadege M, Ratet P, Mysore KS, Sumner LW, Marks MD, Dixon RA.  Plant Physiol. 2009 Nov;151(3):1114-29. Epub 2009 Aug 26.PMID: 19710231 [PubMed - indexed for MEDLINE]

Transcriptome analysis of Arabidopsis wild-type and gl3-sst sim trichomes identifies four additional genes required for trichome development  Marks MD, Wenger JP, Gilding E, Jilk R, Dixon RA.  Mol Plant. 2009 Jul;2(4):803-22. Epub 2009 Jun 19.PMID: 19626137 [PubMed - indexed for MEDLINE]

Identification of candidate genes affecting Delta9-tetrahydrocannabinol biosynthesis in Cannabis sativa  Marks MD, Tian L, Wenger JP, Omburo SN, Soto-Fuentes W, He J, Gang DR, Weiblen GD, Dixon RA.  J Exp Bot. 2009;60(13):3715-26. Epub 2009 Jul 6.PMID: 19581347 [PubMed - indexed for MEDLINE] 

Mechanisms of polycomb gene silencing: knowns and unknowns.  Simon JA, Kingston RE.  Nat Rev Mol Cell Biol. 2009 Oct;10(10):697-708. Epub 2009 Sep 9. Review.PMID: 19738629 [PubMed - indexed for MEDLINE]

Transcription. Sweet silencing.   Simon JA.  Science. 2009 Jul 3;325(5936):45-6. No abstract available. PMID: 19574378 [PubMed - indexed for MEDLINE] 

Differential activity of Wnt/beta-catenin signaling in the embryonic mouse thalamus.Bluske KK, Kawakami Y, Koyano-Nakagawa N, Nakagawa Y. Dev Dyn. 2009 Dec;238(12):3297-309.PMID: 19924825 [PubMed - indexed for MEDLINE]

Progenitor cell maturation in the developing vertebrate retina  Yang HJ, Silva AO, Koyano-Nakagawa N, McLoon SC. Dev Dyn. 2009 Nov;238(11):2823-36.PMID: 19842182 [PubMed - indexed for MEDLINE] 

Feedback regulation of NEUROG2 activity by MTGR1 is required for progression of neurogenesis. Aaker JD, Patineau AL, Yang HJ, Ewart DT, Gong W, Li T, Nakagawa Y, McLoon SC, Koyano-Nakagawa N.  Mol Cell Neurosci. 2009 Dec;42(4):267-77. Epub 2009 Jul 28.PMID: 19646530 [PubMed - indexed for MEDLINE]R

Regional expression of MTG genes in the developing mouse central nervous system.Alishahi A, Koyano-Nakagawa N, Nakagawa Y.  Dev Dyn. 2009 Aug;238(8):2095-102.PMID: 19618476 [PubMed - indexed for MEDLINE]

Sonic hedgehog signaling controls thalamic progenitor identity and nuclei specification in mice Vue TY, Bluske K, Alishahi A, Yang LL, Koyano-Nakagawa N, Novitch B, Nakagawa Y.  J Neurosci. 2009 Apr 8;29(14):4484-97.PMID: 19357274 [PubMed - indexed for MEDLINE]

Sall genes regulate region-specific morphogenesis in the mouse limb by modulating Hox activities.  Kawakami Y, Uchiyama Y, Rodriguez Esteban C, Inenaga T, Koyano-Nakagawa N, Kawakami H, Marti M, Kmita M, Monaghan-Nichols P, Nishinakamura R, Izpisua Belmonte JC.   Development. 2009 Feb;136(4):585-94.PMID: 19168674 [PubMed - indexed for MEDLINE] 

Differential activity of Wnt/beta-catenin signaling in the embryonic mouse thalamus.Bluske KK, Kawakami Y, Koyano-Nakagawa N, Nakagawa Y.  Dev Dyn. 2009 Dec;238(12):3297-309.PMID: 19924825 [PubMed - indexed for MEDLINE]

Chromatin protein HMGB2 regulates articular cartilage surface maintenance via-beta-catenin pathways
Taniguchi N, Carames B., Kawakami Y., Amendt B. A., Komiya S. and Lotz M.  (2009).Proc. Nat. Acad. Sci. U.S.A. 106, 16817-16822, 2009.

Sall genes regulate region-specific morphogenesis in the mouse limb by modulating Hox activities.  Development 136, 585-595.
Kawakami Y., Uchiyama Y., Rodriguez-Esteban C, Inenaga T., Koyano-Nakagawa N., Kawakami H., Marti M., Kmita M., Monaghan-Nichols P., Nishinakamura R, Izpisua Belmonte J.C. (2009) 

Feedback regulation of NEUROG2 activity by MTGR1 is required for progression of neurogenesis. Aaker JD, Patineau AL, Yang  J,  rt DT, Gong W, Li T, Nakagawa Y, McLoon SC, Koyano-Nakagawa N. Mol Cell Neurosci. 2009 Dec;42(4):267-77. Epub 2009 Jul 28.PMID: 19646530 [PubMed - indexed for MEDLINE]

 Regional expression of MTG genes in the developing mouse central nervous system.Alishahi A, Koyano-Nakagawa N, Nakagawa Y.   Dev Dyn. 2009 Aug;238(8):2095-102.PMID: 19618476 [PubMed - indexed for MEDLINE]

Sonic hedgehog signaling controls thalamic progenitor identity and nuclei specification in mice.  Vue TY, Bluske K, Alishahi A, Yang LL, Koyano-Nakagawa N, Novitch B, Nakagawa Y.   J Neurosci. 2009 Apr 8;29(14):4484-97.PMID: 19357274 [PubMed - indexed for MEDLINE]

Role of the Transcriptional Corepressor Bcor in Embryonic Stem Cell Differentiation and Early Embryonic Development Joseph Alan Wamstad, Connie Marie Corcoran, Anne Marjorie Keating, and Vivian J. Bardwell PLoS ONE. 2008; 3(7): e2814. Published online 2008 July 30. doi: 10.1371/journal.pone.0002814. PMCID: PMC2535898

Molecular architecture of the kinetochore-microtubule attachment site is conserved between point and regional centromeres Ajit P. Joglekar, David Bouck, Ken Finley, Xingkun Liu, Yakun Wan, Judith Berman, Xiangwei He, E.D. Salmon, and Kerry S. Bloom J Cell Biol. 2008 May 19; 181(4): 587–594. doi: 10.1083/jcb.200803027. PMCID: PMC2386099

The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains Anja Forche, Kevin Alby, Dana Schaefer, Alexander D Johnson, Judith Berman, and Richard J Bennett PLoS Biol. 2008 May; 6(5): e110. Published online 2008 May 6. doi: 10.1371/journal.pbio.0060110. PMCID: PMC2365976

Haplotype Mapping of a Diploid Non-Meiotic Organism Using Existing and Induced Aneuploidies Melanie Legrand, Anja Forche, Anna Selmecki, Christine Chan, David T Kirkpatrick, and Judith Berman PLoS Genet. 2008 January; 4(1): e1. Prepublished online 2007 November 20. Published online 2008 January 4. doi: 10.1371/journal.pgen.0040001. PMCID: PMC2174976

unc-44 Ankyrin and stn-2 γ-Syntrophin Regulate sax-7 L1CAM Function in Maintaining Neuronal Positioning in Caenorhabditis elegans Shan Zhou, Karla Opperman, Xuelin Wang, and Lihsia Chen Genetics. 2008 November; 180(3): 1429–1443. doi: 10.1534/genetics.108.091272. PMCID: PMC2581946

The C. elegans L1CAM homologue LAD-2 functions as a coreceptor in MAB-20/Sema2–mediated axon guidance Xuelin Wang, Wei Zhang, Thomas Cheever, Valentin Schwarz, Karla Opperman, Harald Hutter, Deanna Koepp, and Lihsia Chen J Cell Biol. 2008 January 14; 180(1): 233–246. doi: 10.1083/jcb.200704178. PMCID: PMC2213605 

Cardiogenic small molecules that enhance myocardial repair by stem cells Hesham Sadek, Britta Hannack, Elizabeth Choe, Jessica Wang, Shuaib Latif, Mary G. Garry, Daniel J. Garry, Jamie Longgood, Doug E. Frantz, Eric N. Olson, Jenny Hsieh, and Jay W. Schneider Proc Natl Acad Sci U S A. 2008 April 22; 105(16): 6063–6068. Published online 2008 April 17. doi: 10.1073/pnas.0711507105. PMCID: PMC2329693

Enabled (Xena) regulates neural plate morphogenesis, apical constriction, and cellular adhesion required for neural tube closure in Xenopus Julaine Roffers-Agarwal, Jennifer B. Xanthos, Katherine A. Kragtorp, and Jeffrey R. Miller Dev Biol. Author manuscript; available in PMC 2009 February 15. PMCID: PMC2266839 Published in final edited form as: Dev Biol. 2008 February 15; 314(2): 393–403. Published online 2007 December 23. doi: 10.1016/j.ydbio.2007.12.010. 

Identification, cloning and characterization of sis7 and sis10 sugar-insensitive mutants of Arabidopsis Yadong Huang, Chun Yao Li, Kelly D Biddle, and Susan I Gibson BMC Plant Biol. 2008; 8: 104. Published online 2008 October 14. doi: 10.1186/1471-2229-8-104. PMCID: PMC2579432

Plant hormone receptors: new perceptions Angela K. Spartz and William M. Gray Genes Dev. 2008 August 15; 22(16): 2139–2148. doi: 10.1101/gad.1693208. PMCID: PMC2735353 

Genetic analysis of CAND1–CUL1 interactions in Arabidopsis supports a role for CAND1-mediated cycling of the SCFTIR1 complex Wenjing Zhang, Hironori Ito, Marcel Quint, He Huang, Laurent D. Noël, and William M. Gray Proc Natl Acad Sci U S A. 2008 June 17; 105(24): 8470–8475. Published online 2008 June 11. doi: 10.1073/pnas.0804144105. PMCID: PMC2448860

Thermodynamically Constrained Averaging Theory Approach for Modeling Flow and Transport Phenomena in Porous Medium Systems: 4. Species Transport Fundamentals Cass T. Miller and William G. Gray Adv Water Resour. Author manuscript; available in PMC 2009 March 1. PMCID: PMC2587001 Published in final edited form as: Adv Water Resour. 2008 March; 31(3): 577–597. doi: 10.1016/j.advwatres.2007.11.004. 

Low protein diet fed exclusively during mouse oocyte maturation leads to behavioral and cardiovascular abnormalities in offspring Adam J Watkins, Adrian Wilkins, Colm Cunningham, V Hugh Perry, Meei J Seet, Clive Osmond, Judith J Eckert, Christopher Torrens, Felino R A Cagampang, Jane Cleal, William P Gray, Mark A Hanson, and Tom P Fleming J Physiol. 2008 April 15; 586(Pt 8): 2231–2244. Published online 2008 February 28. doi: 10.1113/jphysiol.2007.149229. PMCID: PMC2465188

Regulated Trafficking of the MSP/Eph Receptor during Oocyte Meiotic Maturation in C. elegans Hua Cheng, J. Amaranath Govindan, and David Greenstein Curr Biol. Author manuscript; available in PMC 2009 January 5. PMCID: PMC2613949 Published in final edited form as: Curr Biol. 2008 May 20; 18(10): 705–714. Published online 2008 May 8. doi: 10.1016/j.cub.2008.04.043.

Transgene expression and silencing in a tick cell line: a model system for functional tick genomics Timothy J. Kurtti, Joshua T. Mattila, Michael J. Herron, Roderick F. Felsheim, Gerald D. Baldridge, Nicole Y. Burkhardt, Bruce R. Blazar, Perry B. Hackett, Jason M. Meyer, and Ulrike G. Munderloh Insect Biochem Mol Biol. Author manuscript; available in PMC 2009 October 1. PMCID: PMC2581827 Published in final edited form as: Insect Biochem Mol Biol. 2008 October; 38(10): 963–968. Published online 2008 August 5. doi: 10.1016/j.ibmb.2008.07.008. 

Redirecting Specificity of T-Cell Populations For CD19 Using the Sleeping Beauty System Harjeet Singh, Pallavi R. Manuri, Simon Olivares, Navid Dara, Margaret J. Dawson, Helen Huls, Perry B. Hackett, Donald B. Kohn, Elizabeth J. Shpall, Richard E. Champlin, and Laurence J.N. Cooper Cancer Res. Author manuscript; available in PMC 2009 April 15. PMCID: PMC2424272 Published in final edited form as: Cancer Res. 2008 April 15; 68(8): 2961–2971. doi: 10.1158/0008-5472.CAN-07-5600.

Preclinical Studies To Understand Nanoparticle Interaction with the Immune System and Its Potential Effects on Nanoparticle Biodistribution Marina A. Dobrovolskaia, Parag Aggarwal, Jennifer B. Hall, and Scott E. McNeil Mol Pharm. Author manuscript; available in PMC 2009 July 1. PMCID: PMC2613572 Published in final edited form as: Mol Pharm. 2008; 5(4): 487–495. Published online 2008 May 30. doi: 10.1021/mp800032f.

Alterations in Heparan Sulfate in the Vessel in Response to Vascular Injury in the Mouse Neeta Adhikari, Melissa Rusch, Ami Mariash, Qinglu Li, Scott B. Selleck, and Jennifer L. Hall J Cardiovasc Transl Res. Author manuscript; available in PMC 2009 April 23. PMCID: PMC2672426 Published in final edited form as: J Cardiovasc Transl Res. 2008; 1(3): 236–240. doi:10.1007/s12265-008-9047-8.

Common Missense Variant in the Glucokinase Regulatory Protein Gene Is Associated With Increased Plasma Triglyceride and C-Reactive Protein but Lower Fasting Glucose Concentrations Marju Orho-Melander, Olle Melander, Candace Guiducci, Pablo Perez-Martinez, Dolores Corella, Charlotta Roos, Ryan Tewhey, Mark J. Rieder, Jennifer Hall, Goncalo Abecasis, E. Shyong Tai, Cullan Welch, Donna K. Arnett, Valeriya Lyssenko, Eero Lindholm, Richa Saxena, Paul I.W. de Bakker, Noel Burtt, Benjamin F. Voight, Joel N. Hirschhorn, Katherine L. Tucker, Thomas Hedner, Tiinamaija Tuomi, Bo Isomaa, Karl-Fredrik Eriksson, Marja-Riitta Taskinen, Björn Wahlstrand, Thomas E. Hughes, Laurence D. Parnell, Chao-Qiang Lai, Göran Berglund, Leena Peltonen, Erkki Vartiainen, Pekka Jousilahti, Aki S. Havulinna, Veikko Salomaa, Peter Nilsson, Leif Groop, David Altshuler, Jose M. Ordovas, and Sekar Kathiresan Diabetes. 2008 November; 57(11): 3112–3121. doi: 10.2337/db08-0516. PMCID: PMC2570409

Dynein and Star interact in EGFR signaling and ligand trafficking Stanley J. P. Iyadurai, John T. Robinson, Lingzhi Ma, Yungui He, Sarah Mische, Min-gang Li, William Brown, Annabel Guichard, Ethan Bier, and Thomas S. Hays J Cell Sci. Author manuscript; available in PMC 2009 February 2. PMCID: PMC2633900 Published in final edited form as: J Cell Sci. 2008 August 15; 121(Pt 16): 2643–2651. Published online 2008 July 24. doi: 10.1242/jcs.027144.

Dynein Light Intermediate Chain: An Essential Subunit That Contributes to Spindle Checkpoint Inactivation Sarah Mische, Yungui He, Lingzhi Ma, Mingang Li, Madeline Serr, and Thomas S. Hays Mol Biol Cell. 2008 November; 19(11): 4918–4929. doi: 10.1091/mbc.E08-05-0483. PMCID: PMC2575169

Motility Screen Identifies Drosophila IGF-II mRNA-Binding Protein—Zipcode-Binding Protein Acting in Oogenesis and Synaptogenesis Kristin L. M Boylan, Sarah Mische, Mingang Li, Guillermo Marqués, Xavier Morin, William Chia, and Thomas S Hays PLoS Genet. 2008 February; 4(2): e36. Prepublished online 2008 January 9. Published online 2008 February 15. doi: 10.1371/journal.pgen.0040036. PMCID: PMC2242817

Dynein-mediated apical localization of crumbs transcripts is required for Crumbsactivity in epithelial polarity Zhouhua Li, Liwei Wang, Thomas S. Hays, and Yu Cai J Cell Biol. 2008 January 14; 180(1): 31–38. doi: 10.1083/jcb.200707007. PMCID: PMC2213619

The 2008 Canadian Hypertension Education Program recommendations for the management of hypertension: Part 2 – therapy Nadia A Khan, Brenda Hemmelgarn, Robert J Herman, Simon W Rabkin, Finlay A McAlister, Chaim M Bell, Rhian M Touyz, Raj Padwal, Lawrence A Leiter, Jeff L Mahon, Michael D Hill, Pierre Larochelle, Ross D Feldman, Ernesto L Schiffrin, Norman RC Campbell, Malcolm O Arnold, Gordon Moe, Tavis S Campbell, Alain Milot, James A Stone, Charlotte Jones, Richard I Ogilvie, Pavel Hamet, George Fodor, George Carruthers, Kevin D Burns, Marcel Ruzicka, Jacques deChamplain, George Pylypchuk, Robert Petrella, Jean-Martin Boulanger, Luc Trudeau, Robert A Hegele, Vincent Woo, Phil McFarlane, Michel Vallée, Jonathan Howlett, Peter Katzmarzyk, Sheldon Tobe, Richard Z Lewanczuk, and for the Canadian Hypertension Education Program Can J Cardiol. 2008 June; 24(6): 465–475. PMCID: PMC2643190

Vertebrate DM domain proteins bind similar DNA sequences and can heterodimerize on DNA Mark W Murphy, David Zarkower, and Vivian J Bardwell BMC Mol Biol. 2007; 8: 58. Published online 2007 July 2. doi: 10.1186/1471-2199-8-58. PMCID: PMC1931443

Cell type-autonomous and non-autonomous requirements for Dmrt1 in postnatal testis differentiation Shinseog Kim, Vivian J. Bardwell, and David Zarkower Dev Biol. Author manuscript; available in PMC 2008 July 15. PMCID: PMC1995593 Published in final edited form as: Dev Biol. 2007 July 15; 307(2): 314–327. Published online 2007 May 3. doi: 10.1016/j.ydbio.2007.04.046.

A Mammal-Specific Doublesex Homolog Associates with Male Sex Chromatin and Is Required for Male Meiosis Shinseog Kim, Satoshi H Namekawa, Lisa M Niswander, Jeremy O Ward, Jeannie T Lee, Vivian J Bardwell, and David Zarkower PLoS Genet. 2007 April; 3(4): e62. Prepublished online 2007 March 7. Published online 2007 April 20. doi: 10.1371/journal.pgen.0030062. PMCID: PMC1853120

Mice Mutant in the DM Domain Gene Dmrt4 Are Viable and Fertile but Have Polyovular Follicles Jorune Balciuniene, Vivian J. Bardwell, and David Zarkower Mol Cell Biol. 2006 December; 26(23): 8984–8991. Published online 2006 September 18. doi: 10.1128/MCB.00959-06. PMCID: PMC1636805

Structure of a BCOR corepressor peptide in complex with the BCL6 BTB domain dimerAlexandru F. Ghetu, Connie M. Corcoran, Leandro Cerchietti, Vivian J. Bardwell, Ari Melnick, and Gilbert G. Privé Mol Cell. Author manuscript; available in PMC 2009 April 5. PMCID: PMC2665293 Published in final edited form as: Mol Cell. 2008 February 15; 29(3): 384–391. doi: 10.1016/j.molcel.2007.12.026.

Vertebrate DM domain proteins bind similar DNA sequences and can heterodimerize on DNA Mark W Murphy, David Zarkower, and Vivian J Bardwell BMC Mol Biol. 2007; 8: 58. Published online 2007 July 2. doi: 10.1186/1471-2199-8-58. PMCID: PMC1931443

Polycomb Group and SCF Ubiquitin Ligases Are Found in a Novel BCOR Complex That Is Recruited to BCL6 Targets Micah D. Gearhart, Connie M. Corcoran, Joseph A. Wamstad, and Vivian J. Bardwell Mol Cell Biol. 2006 September; 26(18): 6880–6889. doi: 10.1128/MCB.00630-06. PMCID: PMC1592854

Human Ccr4-Not complex is a ligand-dependent repressor of nuclear receptor-mediated transcription G Sebastiaan Winkler, Klaas W Mulder, Vivian J Bardwell, Eric Kalkhoven, and H Th Marc Timmers EMBO J. 2006 July 12; 25(13): 3089–3099. Published online 2006 June 15. doi: 10.1038/sj.emboj.7601194. PMCID: PMC1500986

Genotypic Evolution of Azole Resistance Mechanisms in Sequential Candida albicansIsolates Alix Coste, Anna Selmecki, Anja Forche, Dorothée Diogo, Marie-Elisabeth Bougnoux, Christophe d'Enfert, Judith Berman, and Dominique Sanglard Eukaryot Cell. 2007 October; 6(10): 1889–1904. Published online 2007 August 10. doi: 10.1128/EC.00151-07. PMCID: PMC2043391

Boundary cap cells constrain spinal motor neuron somal migration at motor exit points by a semaphorin-plexin mechanism Romke Bron, Matthieu Vermeren, Natalie Kokot, William Andrews, Graham E Little, Kevin J Mitchell, and James Cohen Neural Develop. 2007; 2: 21. Published online 2007 October 30. doi: 10.1186/1749-8104-2-21. PMCID: PMC2131750

Boundary cap cells constrain spinal motor neuron somal migration at motor exit points by a semaphorin-plexin mechanism Romke Bron, Matthieu Vermeren, Natalie Kokot, William Andrews, Graham E Little, Kevin J Mitchell, and James Cohen Neural Develop. 2007; 2: 21. Published online 2007 October 30. doi: 10.1186/1749-8104-2-21. PMCID: PMC2131750

Molecular Cloning of Pituitary Glycoprotein α-Subunit and Follicle Stimulating Hormone and Chorionic Gonadotropin β-Subunits from New World Squirrel Monkey and Owl Monkey Jonathan G. Scammell, Jane D. Funkhouser, Felricia S. Moyer, Susan V. Gibson, and Donna L. Willis Gen Comp Endocrinol. Author manuscript; available in PMC 2009 February 1. PMCID: PMC2277479 Published in final edited form as: Gen Comp Endocrinol. 2008 February 1; 155(3): 534–541. Published online 2007 August 24. doi: 10.1016/j.ygcen.2007.08.004.

PrimaTB STAT-PAK Assay, a Novel, Rapid Lateral-Flow Test for Tuberculosis in Nonhuman Primates Konstantin P. Lyashchenko, Rena Greenwald, Javan Esfandiari, David Greenwald, Carol A. Nacy, Susan Gibson, Peter J. Didier, Marc Washington, Peter Szczerba, Sherri Motzel, Larry Handt, John M. Pollock, James McNair, Peter Andersen, Jan A. M. Langermans, Frank Verreck, Sean Ervin, Frank Ervin, and Candace McCombs Clin Vaccine Immunol. 2007 September; 14(9): 1158–1164. Published online 2007 July 25. doi: 10.1128/CVI.00230-07. PMCID: PMC2043323

A role for sperm in regulation of egg-laying in the Nematode C. elegans Marie McGovern, Ling Yu, Mary Kosinski, David Greenstein, and Cathy Savage-Dunn BMC Dev Biol. 2007; 7: 41. Published online 2007 May 1. doi: 10.1186/1471-213X-7-41. PMCID: PMC1868018

Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapy Christopher S Hackett, Aron M Geurts, and Perry B Hackett Genome Biol. 2007; 8(Suppl 1): S12. Published online 2007 October 31. doi: 10.1186/gb-2007-8-s1-s12. PMCID: PMC2106846

Prolonged expression of a lysosomal enzyme in mouse liver after Sleeping Beautytransposon-mediated gene delivery: implications for non-viral gene therapy of mucopolysaccharidoses Elena L. Aronovich, Jason B. Bell, Lalitha R. Belur, Roland Gunther, Brenda Koniar, David C. C. Erickson, Patricia A. Schachern, Ilze Matise, R. Scott McIvor, Chester B. Whitley, and Perry B. Hackett J Gene Med. Author manuscript; available in PMC 2007 May 14. PMCID: PMC1868578 Published in final edited form as: J Gene Med. 2007 May; 9(5): 403–415. doi: 10.1002/jgm.1028.

The Concentration of Nuf, a Rab11 Effector, at the Microtubule-organizing Center Is Cell Cycle–regulated, Dynein-dependent, and Coincides with Furrow Formation Blake Riggs, Barbara Fasulo, Anne Royou, Sarah Mische, Jian Cao, Thomas S. Hays, and William Sullivan Mol Biol Cell. 2007 September; 18(9): 3313–3322. doi: 10.1091/mbc.E07-02-0146. PMCID: PMC1951762

Direct Observation of Regulated Ribonucleoprotein Transport Across the Nurse Cell/Oocyte Boundary Sarah Mische, Mingang Li, Madeline Serr, and Thomas S. Hays Mol Biol Cell. 2007 June; 18(6): 2254–2263. doi: 10.1091/mbc.E06-10-0959. PMCID: PMC1877097

The 2007 Canadian Hypertension Education Program recommendations for the management of hypertension: Part 2 – therapy Nadia A Khan, Brenda Hemmelgarn, Raj Padwal, Pierre Larochelle, Jeff L Mahon, Richard Z Lewanczuk, Finlay A McAlister, Simon W Rabkin, Michael D Hill, Ross D Feldman, Ernesto L Schiffrin, Norman RC Campbell, Alexander G Logan, Malcolm Arnold, Gordon Moe, Tavis S Campbell, Alain Milot, James A Stone, Charlotte Jones, Lawrence A Leiter, Richard I Ogilvie, Robert J Herman, Pavel Hamet, George Fodor, George Carruthers, Bruce Culleton, Kevin D Burns, Marcel Ruzicka, Jacques deChamplain, George Pylypchuk, Norm Gledhill, Robert Petrella, Jean-Martin Boulanger, Luc Trudeau, Robert A Hegele, Vincent Woo, Phil McFarlane, Rhian M Touyz, Sheldon W Tobe, and for the Canadian Hypertension Education Program Can J Cardiol. 2007 May 15; 23(7): 539–550. PMCID: PMC2650757