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Gralnick Lab Publications

West, E.A., A. Jain and J.A. Gralnick. 2017. Engineering a native inducible expression system in Shewanella oneidensis to control extracellular electron transfer. ACS Synth Biol. doi: 10.1021/acssynbio.6b00349
Bursac, T., J.A. Gralnick and J. Gescher. 2017. Acetoin production via unbalanced fermentation in Shewanella oneidensis. Biotechnol Bioeng. 114(6):1283-1289. doi: 10.1002/bit.26243
Badalamenti, J.P., Z.M. Summers, C.H. Chan, J.A. Gralnick and D.R. Bond. 2016. Isolation and genomic characterization of ‘Desulfuromonas soudanensis WTL’, a metal- and electrode-respiring bacterium from anoxic deep subsurface brine. Front Microbiol. 7:913. doi:10.3389/fmicb.2016.00913
Kane, A.L., E.D. Brutinel, H. Joo, R. Maysonet Sanchez, C.M. VanDrisse, N.J. Kotloski and J.A. Gralnick. 2016. Formate metabolism in Shewanella oneidensis generates proton motive force and prevents growth without an electron acceptor. J Bacteriol. 198(8):1337-1346.
Kane, A.L., B. Al-Shayeb, P.V. Holec, S. Rajan, N.E. Le Mieux, S.C. Heinsch, S. Psarska, K.G. Aukema, C.A. Sarkar, E.A. Nater and J.A. Gralnick. 2016. Toward bioremediation of methylmercury using silica encapsulated Escherichia coli harboring the mer operon. PLoS ONE 11(1):e0147036.
Bennett, B.D., E.D. Brutinel and J.A. Gralnick. 2015. A ferrous iron exporter mediates iron resistance in Shewanella oneidensis MR-1. Appl Environ Microbiol. 81(22):7938-44.
Yang, H., E.W. Krumholz, E.D. Brutinel, N.P. Palani, M.J. Sadowksy, A.M. Odlyzko, J.A. Gralnick and I.G. Libourel. 2014. Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis. PLoS Comput Biol. 10(9):e1003848.
Webster, D.P., M.A. TerAvest, D.F. Doud, A. Chakravorty, E.C. Holmes, C.M. Radens, S. Sureka, J.A. Gralnick and L.T. Angenent. 2014. An arsenic-specific biosensor with genetically engineered Shewanella oneidensis in a bioelectrochemical system. Biosens Bioelectron. 62:320-4.
TerAvest, M.A., M.A. Rosenbaum, N.J. Kotloski, J.A. Gralnick and L.T. Angenent. 2014. Oxygen allows Shewanella oneidensis MR-1 to overcome mediator washout in a continuously-fed bioelectrochemical system. Biotechnol Bioeng. 111(4):692-9.
Brutinel, E.D., A.M. Dean and J.A. Gralnick. 2013. Description of a riboflavin biosynthetic gene variant prevalent in the phylum Proteobacteria. J Bacteriol. 195(24):5479-86.
Kane, A.L., D.R. Bond and J.A. Gralnick. 2013. Electrochemical analysis of Shewanella oneidensis engineered to bind gold electrodes. ACS Synth Biol. 2(2):93-101.
Summers, Z.M., J.A. Gralnick and D.R. Bond. 2013. Cultivation of an obligate Fe(II)-oxidizing lithoautotrophic bacterium using electrodes. mBio. 4(1) e00420-12.
Kotloski, N.J. and J.A. Gralnick. 2013. Flavin electron shuttles dominate extracellular electron transfer by Shewanella oneidensis. mBio. 4(1) e00553-12. 
Gralnick, J.A. 2012. On conducting electron traffic across the periplasm. Biochem Soc Trans. 40(6):1178-80.
Brutinel, E.D. and J.A. Gralnick. 2012. Preferential utilization of D-lactate by Shewanella oneidensis. Appl Environ Microbiol. 78(23)8474-6.
Brutinel, E.D. and J.A. Gralnick. 2012. Anomalies of the anaerobic TCA cycle in Shewanella oneidensis revealed by Tn-seq. Mol Microbiol. 86(2):273-83.
Liu, N., Y. Xu, S. Hossain, N. Huang, D. Coursolle, J.A. Gralnick and E.M. Boon. 2012. Nitric oxide regulation of cyclic di-GMP synthesis and hydrolysis in Shewanella woodyi. Biochemistry. 51(10):2087-99.
Brutinel, E.D. and J.A. Gralnick. 2012. Shuttling Happens: soluble flavin mediators of extracellular electron transfer in Shewanella. Appl Microbiol Biotechnol. 93(1):41-8.
Flynn, C.M., K.A. Hunt, J.A. Gralnick and F. Srienc. 2012. Construction and elementary model analysis of a metabolic model for Shewanella oneidensis MR-1. Biosystems. 107(2):120-8.


Pinzon, N.M., K.G. Aukema, J.A. Gralnick and L.P. Wackett. 2011. Nile red detection of bacterial hydrocarbons and ketones in a high-throughput format. mBio. 2(4):e00109-11.
Sundararajan, A., J. Kurowski, T. Yan, D.M. Klingeman, M.P. Joachimiak, J. Zhou, B. Naranjo, J.A. Gralnick and M.W. Fields. 2011. Shewanella oneidensis MR-1 sensory box protein involved in aerobic and anoxic growth. Appl Environ Microbiol. 77(13):4647-56.
Jiao, Y., F. Qian, Y. Li, G. Wang, C.W. Saltikov and J.A. Gralnick. 2011. Deciphering the electron transport pathway for graphene oxide reduction by Shewanella oneidensis MR-1. J Bacteriol. 193(14):3662-5.
Cruz-Garcia, C., A.E. Murray, J.L. Rodrigues, J.A. Gralnick, L.A. McCue, M.F. Romine, F.E. Löffler and J.M. Tiedje. 2011. Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1. BMC Microbiol. Mar;11:64.
Ross D.E., J.M. Flynn, D.B. Baron, J.A. Gralnick and D.R. Bond. 2011. Towards electrosynthesis in Shewanella: energetics of reversing the Mtr pathway for reductive metabolism. PLoS One. Feb; 6(2):e16649.
2010Flynn J.M., D.E. Ross, K.A. Hunt, D.R. Bond and J.A. Gralnick. 2010. Engineering unbalanced fermentations by using engineered electrode-interfaced bacteria. mBio. Nov;1(5):e00190-10.
mBiosphere Comment
Covington, E.D., C.B., Gelbmann, N.J. Kotloski and J.A. Gralnick. 2010. An essential role for UshA in processing of extracellular flavin electron shuttles by Shewanella oneidensis. Mol Microbiol. Oct; 78(2):519-32.
Coursolle, D. and J.A. Gralnick. 2010. Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1. Mol Microbiol. Aug; 77(4):995-1008.
Johnson, E.T., D.B. Baron, B. Naranjo, D.R. Bond, C. Schmidt-Dannert and J.A. Gralnick. 2010. Light-driven proton pumping in an engineered bacterium enhances survival and electricity production. Appl Environ Microbiol. Jul; 76(13):4123-9.
Celebrating Ethan’s Life
Sukovich, D.J., J.L Seffernick, J.E. Richman, K.A. Hunt, J.A. Gralnick and L.P. Wackett. 2010. Head-to-head hydrocarbon biosynthetic genes in Shewanella oneidensis strain MR-1. Appl Environ Microbiol. Jun; 76(12):3842-9.
Sukovich, D.J., J.L. Seffernick, J.E. Richman, J.A. Gralnick and L.P. Wackett. 2010. Widespread head-to-head hydrocarbon biosynthesis in bacteria. Appl Environ Microbiol. Jun; 76(12):3850-62.
Hunt, K.A., J.M. Flynn, B. Naranjo, I.D. Shikhare and J.A. Gralnick. 2010. Substrate-level phosphorylation is the primary source of energy conservation during anaerobic respiraton of Shewanella oneidensis strain MR-1. J Bacteriol. Jul; 192(13):3345-51.
Coursolle, D., D.B. Baron, D.R. Bond and J.A. Gralnick. 2010. The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis. J Bacteriol. Jan; 192(2):467-74.
2009Boal A.K., J.C. Genereux, P.A. Sontz, J.A. Gralnick, D.K. Newman and J.K. Barton. Redox signaling between DNA repair proteins for efficient lesion detection. 2009. Proc Natl Acad Sci U S A. Aug 31.
Baron, D.B., E. Labelle, D. Coursolle, J.A. Gralnick and D.R. Bond. 2009. Electrochemical measurement of electron transfer kinetics by Shewanella oneidensis MR-1. J Biol Chem. Oct 16; 284(42):28865-73.
2008Hau, H.H., A. Gilbert, D. Coursolle and J.A. Gralnick. 2008. Mechanism and Consequences of anaerobic respiration of cobalt by Shewanella oneidensis strain MR-1. Appl Environ Mircobiol. Nov;74(22):6880-6.
Marsili, E., D.B. Baron, I.D. Shikhare, D. Coursolle, J.A. Gralnick and D.R. Bond. 2008. Shewanella secretes flavins that mediate extracellular electron transfer. Proc Natl Acad Sci U S A. Mar 11; 105(10): 3968-3973.
2007Hau, H.H. and J.A. Gralnick. 2007. Ecology and biotechnology of the genus Shewanella. Ann Rev Microbiol. Jun 18; 61: 237 – 258.
Gralnick, J.A. and D.K. Newman. 2007. Extracellular Respiration. Mol Microbiol. July; 65(1): 1-11.
2006Gralnick, J.A., H. Vali, D.L. Lies and D.K. Newman. 2006. Extracellular respiration of dimethyl sulfoxide by Shewanella oneidensis strain MR-1. Proc Natl Acad Sci U S A. Mar 21; 103(12): 4669-4674.
2005Newman, D.K. and J.A. Gralnick. 2005. What genetics offers geobiology. Reviews in Mineralogy and Geochemistry. V. 59; p. 9-26.
Kappler A., Emerson D., Edwards K., Amend J.P., Gralnick J.A., Grathwohl P., Hoehler T., Straub K.L., 2005. Microbial activity in biogeochemical gradients - new aspects of research. Geobiology, 3, 229-233.